Package: bsocialv2
Title: Analysis of Microbial Social Behavior in Bacterial Consortia
Version: 0.1.1
Authors@R: c(
    person("Maria", "Garcia Toledo", role = c("aut")),
    person("Juan Emilio", "Martinez Manjon", role = c("aut", "cre"), email = "juanemartinez999@hotmail.com"),
    person("Jessica", "Purswani", role = c("aut")),
    person("Rocio", "Romero Zaliz", role = c("aut"))
  )
Description: Provides an S4 class and methods for analyzing microbial social
    behavior in bacterial consortia. Includes growth parameter extraction,
    social behavior classification (cooperators/cheaters/neutrals),
    diversity effect analysis, consortium assembly path finding, and
    stability analysis via coefficient of variation. Methods are described
    in Purswani et al. (2017) <doi:10.3389/fmicb.2017.00919>.
License: MIT + file LICENSE
URL: https://github.com/Juane99/bsocialv2
BugReports: https://github.com/Juane99/bsocialv2/issues
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends: R (>= 4.0), methods
Imports: dplyr, ggplot2, grDevices, growthcurver, igraph, magrittr,
        reshape2, rlang, stats, tidyr, viridis
Suggests: readr, testthat (>= 3.0.0), knitr, rmarkdown
Config/testthat/edition: 3
VignetteBuilder: knitr
Collate: 'bsocial-package.R' 'bsocial-log.R' 'bsocial-class.R'
        'transform-raw-data.R' 'transform-curated-data.R'
        'calculate-growth-params.R' 'plot-processed-curves.R'
        'analyze-growth.R' 'analyze-social-behavior.R'
        'summarize-social-behavior.R' 'analyze-diversity.R'
        'analyze-biofilm-sequence.R' 'analyze-stability.R'
NeedsCompilation: no
Packaged: 2026-04-07 12:33:00 UTC; juane
Author: Maria Garcia Toledo [aut],
  Juan Emilio Martinez Manjon [aut, cre],
  Jessica Purswani [aut],
  Rocio Romero Zaliz [aut]
Maintainer: Juan Emilio Martinez Manjon <juanemartinez999@hotmail.com>
Repository: CRAN
Date/Publication: 2026-04-13 11:40:02 UTC
Built: R 4.4.3; ; 2026-04-13 15:05:26 UTC; unix
