R: Bayesian Dynamic Energy Budget Modelling

# Bayesian Dynamic Energy Budget Modelling

## Documentation for package ‘BayesianDEB’ version 0.1.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

arrhenius | Arrhenius Temperature Correction
bdeb_data | Prepare Data for BDEB Models
bdeb_derived | Compute Derived Biological Quantities from the Posterior
bdeb_diagnose | MCMC Convergence Diagnostics
bdeb_ec50 | Extract EC50 and NEC from a DEBtox Fit
bdeb_fit | Fit a BDEB Model via Hamiltonian Monte Carlo
bdeb_loo | LOO Cross-Validation for Model Comparison
bdeb_model | Specify a BDEB Model
bdeb_plots | Plot Methods for BDEB Objects
bdeb_ppc | Posterior Predictive Checks for BDEB Models
bdeb_predict | Predict from a BDEB Fit
bdeb_prior_predictive | Prior Predictive Check
bdeb_session_info | Reproducibility Report
bdeb_summary | Posterior Summary for BDEB Parameters
bdeb_tox | DEBtox Model Specification
coef.bdeb_fit | Extract Point Estimates from a BDEB Fit
debtox_growth | Simulated DEBtox Growth Data
debtox_simulate | Simulate DEBtox Growth Under Toxicant Exposure
deb_fluxes | Compute DEB Energy Fluxes
deb_simulate | Simulate DEB Growth Trajectory
eisenia_cd | Eisenia andrei Cadmium Toxicity Data (Van Gestel 1991)
eisenia_growth | Simulated Eisenia fetida Growth Data
eisenia_neuhauser | Eisenia fetida Growth Data (Neuhauser 1980)
folsomia_repro | Simulated Folsomia candida Reproduction Data
observation_models | Observation Model Specifications
obs_lognormal | Observation Model Specifications
obs_negbinom | Observation Model Specifications
obs_normal | Observation Model Specifications
obs_poisson | Observation Model Specifications
obs_student_t | Observation Model Specifications
plot.bdeb_fit | Plot a BDEB Fit
plot.bdeb_ppc | Plot Posterior Predictive Checks
plot_dose_response | Plot DEBtox Dose-Response
predict.bdeb_fit | Predict from a BDEB Fit
priors | Prior Distribution Specifications for BDEB Models
prior_beta | Prior Distribution Specifications for BDEB Models
prior_default | Default Priors for DEB Parameters
prior_exponential | Prior Distribution Specifications for BDEB Models
prior_halfcauchy | Prior Distribution Specifications for BDEB Models
prior_halfnormal | Prior Distribution Specifications for BDEB Models
prior_lognormal | Prior Distribution Specifications for BDEB Models
prior_normal | Prior Distribution Specifications for BDEB Models
prior_species | Species-Specific Priors from the AmP Collection
repro_to_intervals | Convert Cumulative Reproduction to Intervals