CNA                     Copy number aberration (CNA) data from colon
                        cancer patients
SNV                     Single nucleotide variant (SNV) data from colon
                        cancer patients
auto.axis               Create ideal labels and values for a given
                        numeric vector (detects log scales)
colour.gradient         Creates a colour gradient
covariates.grob         Create one or more covariate bars
create.barplot          Make a barplot
create.boxplot          Make a boxplot
create.colourkey        Create Colourkey
create.dendrogram       Generate a dendrogram
create.densityplot      Make a density plot
create.dotmap           Make a dotmap with coloured background
create.gif              Make a gif
create.heatmap          Make a heatmap
create.hexbinplot       Make a hexagonally binned plot
create.histogram        Make a histogram
create.lollipopplot     Make a lollipopplot
create.manhattanplot    Make a Manhattan plot
create.multipanelplot   Joins plots together
create.multiplot        Joins plots together
create.polygonplot      Make a polygonplot
create.qqplot.comparison
                        Make a quantile-quantile plot of two samples
create.qqplot.fit       Make a quantile-quantile plot of a sample
create.qqplot.fit.confidence.interval
                        Create the confidence bands for a one-sample qq
                        plot
create.scatterplot      Make a scatterplot
create.segplot          Make a segplot
create.stripplot        Make a strip-plot
create.violinplot       Make a violin plot
critical.value.ks.test
                        Critical Value for Kolmogorov-Smirnov Test
default.colours         Provides default colour schemes.
display.colours         Function to display R colors, as well as
                        corresponding R grey colours.
display.statistical.result
                        Utility function to display statistical result
                        in a plot
dist                    Distance Matrix Computation
force.colour.scheme     Based on predefined colour schemes, returns a
                        vector of corresponding colours.
generate.at.final       Generates alternative default tick mark
                        locations for create.densityplot() and
                        create.scatterplot()
get.corr.key            Correlation Key
get.correlation.p.and.corr
                        Calculate a correlation and its statistical
                        significance
get.defaults            Get operating system specific default
                        properties
get.line.breaks         Get line breaks
legend.grob             Generate a legend grob
microarray              Microarray dataset of colon cancer patients
panel.BL.bwplot         A lattice::panel.bwplot replacement that fixes
                        colouring issues
patient                 Dataset describing qualities of 58 colon cancer
                        patients
pcawg.colours           Return standard PCAWG colour palettes.
scientific.notation     Use scientific notation in plots
show.available.palettes
                        Display the available colour palettes
thousands.split         Divide strings into groups of thousands
write.metadata          Writes Metadata
write.plot              Simplifies plotting by standardizing and
                        centralizing all output-handling
