Countfilter             Filtering out lowly expressed genes based on
                        count
F1_miRNA_count          Count table of miRNAs in F1 (F1: the polyploid
                        progeny).
F1_miRNA_rpm            RPM table of miRNAs in F1 (F1: the polyploid
                        progeny).
F1_sRNA_seq             All sRNA sequences in F1 (F1: the polyploid
                        progeny).
Get12Bins               Non-additive expression analysis
GetDAtable              Non-additive expression analysis
GetDEdata               Get the results of differential expression
                        analysis.
P1_miRNA_count          Count table of miRNAs in P1 (P1: one of the
                        parents).
P1_miRNA_rpm            RPM table of miRNAs in P1 (P1: one of the
                        parents).
P1_sRNA_seq             All sRNA sequences in P1 (P1: one of the
                        parents).
P2_miRNA_count          Count table of miRNAs in P2 (P2: one of the
                        parents).
P2_miRNA_rpm            RPM table of miRNAs in P2 (P2: one of the
                        parents).
P2_sRNA_seq             All sRNA sequences in P2 (P2: one of the
                        parents).
Rpmfilter               Filtering out lowly expressed genes based on
                        RPM
VennData                Get the details of the Venn Diagram
VennPlot                Make a three-set Venn Diagram
basepreplot             Plot the base frequency distribution diagram
                        for small RNA (sRNA)
lenplot                 Plot the length distribution diagram for small
                        RNAs (sRNAs)
mirnapredata            Base frequency distribution of small RNA (sRNA)
polyDESeq               Make a Triangle Diagram
srnapredata             Length distribution of small RNAs (sRNAs)
