R: Non-Additive Expression Analysis of Hybrid Offspring

# Non-Additive Expression Analysis of Hybrid Offspring

## Documentation for package ‘ExpGenetic’ version 0.1.0

- DESCRIPTION file

## Help Pages

basepreplot | Plot the base frequency distribution diagram for small RNA (sRNA)
Countfilter | Filtering out lowly expressed genes based on count
F1_miRNA_count | Count table of miRNAs in F1 (F1: the polyploid progeny).
F1_miRNA_rpm | RPM table of miRNAs in F1 (F1: the polyploid progeny).
F1_sRNA_seq | All sRNA sequences in F1 (F1: the polyploid progeny).
Get12Bins | Non-additive expression analysis
GetDAtable | Non-additive expression analysis
GetDEdata | Get the results of differential expression analysis.
lenplot | Plot the length distribution diagram for small RNAs (sRNAs)
mirnapredata | Base frequency distribution of small RNA (sRNA)
P1_miRNA_count | Count table of miRNAs in P1 (P1: one of the parents).
P1_miRNA_rpm | RPM table of miRNAs in P1 (P1: one of the parents).
P1_sRNA_seq | All sRNA sequences in P1 (P1: one of the parents).
P2_miRNA_count | Count table of miRNAs in P2 (P2: one of the parents).
P2_miRNA_rpm | RPM table of miRNAs in P2 (P2: one of the parents).
P2_sRNA_seq | All sRNA sequences in P2 (P2: one of the parents).
polyDESeq | Make a Triangle Diagram
Rpmfilter | Filtering out lowly expressed genes based on RPM
srnapredata | Length distribution of small RNAs (sRNAs)
VennData | Get the details of the Venn Diagram
VennPlot | Make a three-set Venn Diagram