R: Haplotype Trend Regression with eXtra Flexibility (HTRX)

# Haplotype Trend Regression with eXtra Flexibility (HTRX)

## Documentation for package ‘HTRX’ version 1.2.4

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

HTRX-package | HTRX: Haplotype Trend Regression with eXtra flexibility
computeR2 | Compute variance explained by models
data_split | Data split
do_cumulative_htrx | Cumulative HTRX on long haplotypes
do_cumulative_htrx_step1 | Cumulative HTRX on long haplotypes
do_cv | Two-stage HTRX: Model selection on short haplotypes
do_cv_direct | Direct HTRX: k-fold cross-validation on short haplotypes
do_cv_step1 | Two-stage HTRX: Model selection on short haplotypes
example_data_nosnp | Example covariate data
example_hap1 | Example genotype data for the first genome
example_hap2 | Example genotype data for the second genome
extend_haps | Cumulative HTRX on long haplotypes
HTRX | HTRX: Haplotype Trend Regression with eXtra flexibility
htrx_max | Maximum independent features for HTRX
htrx_nfeatures | Total number of features for HTRX
infer_fixedfeatures | Two-stage HTRX: Model selection on short haplotypes
infer_step1 | Two-stage HTRX: Model selection on short haplotypes
kfold_split | Data split
make_cumulative_htrx | Cumulative HTRX on long haplotypes
make_htr | Generate haplotype data
make_htrx | Generate haplotype data
make_snp | Generate haplotype data
mypredict | Compute variance explained by models
themodel | Model fitting
twofold_split | Data split