Package: SMITIDstruct
Type: Package
Encoding: UTF-8
Title: Data Structure and Manipulations Tool for Host and Viral
        Population
Version: 0.0.5
Date: 2019-06-14
Authors@R: c(person("Jean-Francois", "Rey", role = c("aut", "cre"), email = "jean-francois.rey@inra.fr"))
Author: Jean-Francois Rey [aut, cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inra.fr>
Description: Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID).
  It allow sequence-space-time host and viral population data storage, indexation and querying.
License: GPL (>= 2) | file LICENSE
LazyData: true
BuildVignettes: true
NeedsCompilation: no
Biarch: true
URL: https://informatique-mia.inra.fr/biosp/anr-smitid-project,
        https://gitlab.paca.inra.fr/SMITID/structR
BugReports: https://gitlab.paca.inra.fr/SMITID/structR/issues
Depends: methods, utils, grDevices (>= 3.0.0), graphics (>= 3.0.0), R
        (>= 3.3.0)
DependsNote: BioC (>= 3.0)
Imports: ggplot2, sf (>= 0.6.3), stats (>= 3.0.2), Biostrings (>=
        2.0.0)
ImportsNote: BioC (>= 3.0), Recommended: Biostrings
Suggests: testthat (>= 2.0)
Collate: 'Class-Host.R' 'Class-ViralPop.R' 'Methods-Host.R'
        'Methods-ViralPop.R' 'Methods-time.R' 'SMITIDstruct.R' 'demo.R'
        'diversity.R' 'index.R'
RoxygenNote: 6.1.1
Packaged: 2019-06-14 10:05:06 UTC; jfrey
Repository: CRAN
Date/Publication: 2019-06-14 11:30:11 UTC
Built: R 4.6.0; ; 2026-04-25 18:06:00 UTC; unix
