R: Data Structure and Manipulations Tool for Host and Viral Population

# Data Structure and Manipulations Tool for Host and Viral Population

## Documentation for package ‘SMITIDstruct’ version 0.0.5

- DESCRIPTION file

## Help Pages

SMITIDstruct-package | Data Structure and Manipulation Tool for Host and Viral Population
addcode | addcode
addHost | addHost
addIndex | addIndex
addViralObs | addViralObs
alleleCount | alleleCount
concatViralPop | concatViralPop
createAViralPop | createAViralPop
createHost | createHost
createIndex | createIndex
demo.SMITIDstruct.run | demo.SMITIDstruct.run
diversity.pDistance | diversity.pDistance
diversity.sfs | diversity.sfs
getCov | getCov
getDate | getDate
getDiversity.pDistance | getDiversity.pDistance
getDiversity.sfs | getDiversity.sfs
getInfosByHostAndTime | getInfosByHostAndTime
getStates | getStates
getTimeLine | getTimeLine
getTimestamp | getTimestamp
getTransmissionTree | getTransmissionTree
Host | Class Host
Host-class | Class Host
is.juliendate | is.juliendate
is.StringDate | is.StringDate
is.timestamp | is.timestamp
isInCode | isInCode
loadCoords | loadCoords
loadCovs | loadCovs
loadHost | loadHost
loadStates | loadStates
loadTree | loadTree
loadTreeDF | loadTreeDF
loadViralObs | loadViralObs
loadViralPop | loadViralPop
loadViralPopSet | loadViralPopSet
mergeCode | mergeCode
plotDiversity.pDistance | plotDiversity.pDistance
plotDiversity.sfs | plotDiversity.sfs
setStates | setStates
simulateStates | simulateStates
SMITIDstruct | Data Structure and Manipulation Tool for Host and Viral Population
ViralPop | Class ViralPop
ViralPop-class | Class ViralPop
_PACKAGE | Data Structure and Manipulation Tool for Host and Viral Population