Host                    Class Host
SMITIDstruct-package    Data Structure and Manipulation Tool for Host
                        and Viral Population
ViralPop                Class ViralPop
addHost                 addHost
addIndex                addIndex
addViralObs             addViralObs
addcode                 addcode
alleleCount             alleleCount
concatViralPop          concatViralPop
createAViralPop         createAViralPop
createHost              createHost
createIndex             createIndex
demo.SMITIDstruct.run   demo.SMITIDstruct.run
diversity.pDistance     diversity.pDistance
diversity.sfs           diversity.sfs
getCov                  getCov
getDate                 getDate
getDiversity.pDistance
                        getDiversity.pDistance
getDiversity.sfs        getDiversity.sfs
getInfosByHostAndTime   getInfosByHostAndTime
getStates               getStates
getTimeLine             getTimeLine
getTimestamp            getTimestamp
getTransmissionTree     getTransmissionTree
is.StringDate           is.StringDate
is.juliendate           is.juliendate
is.timestamp            is.timestamp
isInCode                isInCode
loadCoords              loadCoords
loadCovs                loadCovs
loadHost                loadHost
loadStates              loadStates
loadTree                loadTree
loadTreeDF              loadTreeDF
loadViralObs            loadViralObs
loadViralPop            loadViralPop
loadViralPopSet         loadViralPopSet
mergeCode               mergeCode
plotDiversity.pDistance
                        plotDiversity.pDistance
plotDiversity.sfs       plotDiversity.sfs
setStates               setStates
simulateStates          simulateStates
