R: Flexible Population Dynamics Simulations

# Flexible Population Dynamics Simulations

## Documentation for package ‘aae.pop’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

add_remove | Specify additions or removals in models of population dynamics
add_remove_post | Specify additions or removals in models of population dynamics
add_remove_pre | Specify additions or removals in models of population dynamics
all_cells | Isolate elements of population dynamics models
all_classes | Isolate elements of population dynamics models
beverton_holt | Common forms of density dependence
combine | Isolate elements of population dynamics models
covariates | Specify covariate dependence in models of population dynamics
demographic_stochasticity | Specify environmental and demographic stochasticity in models of population dynamics
density_dependence | Specify density dependence in models of population dynamics
density_dependence_n | Specify density dependence in models of population dynamics
density_functions | Common forms of density dependence
dispersal | Specify dispersal between populations in a metapopulation model
dynamics | Create and update population dynamics objects
emps | Calculate expected minimum population size (EMPS) for a 'simulate' object
environmental_stochasticity | Specify environmental and demographic stochasticity in models of population dynamics
exps | Calculate expected population size for a 'simulate' object based on generic functions (ExPS)
format_covariates | Specify covariate dependence in models of population dynamics
get_cdf | Calculate the cumulative distribution function of a summary statistic across all iterations of a 'simulate' object
get_pdf | Calculate the probability density of a summary statistic across all iterations of a 'simulate' object
is.dynamics | Create and update population dynamics objects
is.interaction | Create a population dynamics object with multiple species
is.metapopulation | Create a metapopulation dynamics object
is.multispecies | Create a population dynamics object with multiple species
is.simulation | Simulate single or multispecies population dynamics in R
is.simulation_list | Simulate single or multispecies population dynamics in R
masks | Isolate elements of population dynamics models
metapopulation | Create a metapopulation dynamics object
multispecies | Create a population dynamics object with multiple species
pairwise_interaction | Specify interactions between two species
pr_extinct | Calculate (quasi-)extinction risk for a 'simulate' object
replicated_covariates | Specify replicate-specific covariate dependence in models of population dynamics
reproduction | Isolate elements of population dynamics models
ricker | Common forms of density dependence
risk_curve | Calculate (quasi-)extinction risk at multiple thresholds for a 'simulate' object
rmultiunit | Random number generators not available in existing R packages
rmultiunit_from_real | Random number generators not available in existing R packages
rng | Random number generators not available in existing R packages
runit | Random number generators not available in existing R packages
runit_from_real | Random number generators not available in existing R packages
simulate | Simulate single or multispecies population dynamics in R
simulate.dynamics | Simulate single or multispecies population dynamics in R
stochasticity | Specify environmental and demographic stochasticity in models of population dynamics
survival | Isolate elements of population dynamics models
transition | Isolate elements of population dynamics models
unit_to_real | Random number generators not available in existing R packages
update.dynamics | Create and update population dynamics objects
updaters | Functions for a single time-step update
update_binomial_leslie | Functions for a single time-step update
update_crossprod | Functions for a single time-step update
update_multinomial | Functions for a single time-step update