R: Density-Weighted Proportion

# Density-Weighted Proportion

## Documentation for package ‘dwp’ version 1.2

- DESCRIPTION file

## Help Pages

A C D E F G I J L M N O P Q R S X misc

## -- A --

Acins | Calculate Area of Intersection inside Circle and Square with Common Center
addCarcass | Add Carcasses to a Site Layout
addCarcass.data.frame | Add Carcasses to a Site Layout
addCarcass.shapeCarcass | Add Carcasses to a Site Layout
aic | Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.dd | Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.ddArray | Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.ddArraycc | Calculate Akaike Information Criterion (AICc) for Distance Distributions
alt_names | Names of the Named Distributions

## -- C --

calcMstar | Calculate posterior distribution of M and extract statistics (M* and CI)
carcass_polygon | Example Carcass Distances to Accompany the Polygon Layout Data Set
carcass_simple | Carcass Data to Accompany the Simple Geometry Data Format
carcass_simple0 | Full, Simulated carcass_simple Data Set (Including Locations and Missed Carcasses)
cof2parms | Convert GLM Coefficients into Named Distribution Parameters
cof2parms.dd | Convert GLM Coefficients into Named Distribution Parameters
cof2parms.matrix | Convert GLM Coefficients into Named Distribution Parameters
cof2parms.numeric | Convert GLM Coefficients into Named Distribution Parameters
cofOK | Check Whether GLM Coefficients Give Proper Distribution
cofOK0 | Check Whether GLM Coefficients Give Proper Distribution
cofOKInf | Check Whether GLM Coefficients Give Proper Distribution
cof_name | Names of the GLM Coefficients for Each Distribution
constraints | Constraints on GLM Coefficients for Extensibility to a Distribution
constraints_par | Constraints on Parameters to Assure Extensibility

## -- D --

dd2ddSim | Extract Parameters from a Distance Model ('dd') and Format as 'ddSim' Object
ddCI | Calculate CI for CDF, PDF, or quantile
ddd | Calculate Probability Functions for Distance Distributions
ddFit | Fit Distance Distribution Model(s)
ddFit.data.frame | Fit Distance Distribution Model(s)
ddFit.list | Fit Distance Distribution Model(s)
ddFit.rings | Fit Distance Distribution Model(s)
ddFit.ringscc | Fit Distance Distribution Model(s)
ddFit.xyLayout | Fit Distance Distribution Model(s)
ddPrint | Print S3 Objects in 'dwp' Package
ddSim | Simulation of Dispersion Parameters
ddSim.dd | Simulation of Dispersion Parameters
degOrder | An Ordering of the Models by Degree of the Polynomial
Distributions | Probability Distributions for Carcasses Versus Distance from Turbine
distr_names | Full List of Names of Distributions
dmb | Probability Distributions for Carcasses Versus Distance from Turbine
dwp | Density-Weighted Proportion
dxep0 | Probability Distributions for Carcasses Versus Distance from Turbine
dxep012 | Probability Distributions for Carcasses Versus Distance from Turbine
dxep0123 | Probability Distributions for Carcasses Versus Distance from Turbine
dxep02 | Probability Distributions for Carcasses Versus Distance from Turbine
dxep1 | Probability Distributions for Carcasses Versus Distance from Turbine
dxep12 | Probability Distributions for Carcasses Versus Distance from Turbine
dxep123 | Probability Distributions for Carcasses Versus Distance from Turbine
dxep2 | Probability Distributions for Carcasses Versus Distance from Turbine
dxepi0 | Probability Distributions for Carcasses Versus Distance from Turbine

## -- E --

estdwp | Estimate DWP
estdwp.psiHat | Estimate DWP
estdwp.psiHatcc | Estimate DWP
estpsi | Estimate Probability Carcass lands in Searched Area
estpsi.data.frame | Estimate Probability Carcass lands in Searched Area
estpsi.rdat | Estimate Probability Carcass lands in Searched Area
estpsi.rings | Estimate Probability Carcass lands in Searched Area
estpsi.ringscc | Estimate Probability Carcass lands in Searched Area
estpsi.rpA | Estimate Probability Carcass lands in Searched Area
estpsi.xyLayout | Estimate Probability Carcass lands in Searched Area
exclude | Remove Particular Names from a Longer List
exportGenEst | Export Estimated Density-Weighted Proportion to File in Proper GenEst Format

## -- F --

fmmax | Find suitable mmax for clipping improper priors for M
fmmax.ab | Find suitable mmax for clipping improper priors for M
formatGenEst | Format DWP Estimate for Use in GenEst

## -- G --

getncarc | Simple Function to Extract Carcass Counts
getncarc.dd | Simple Function to Extract Carcass Counts
getncarc.ddArray | Simple Function to Extract Carcass Counts
getncarc.ddArraycc | Simple Function to Extract Carcass Counts
getncarc.rings | Simple Function to Extract Carcass Counts
getncarc.ringscc | Simple Function to Extract Carcass Counts
getncarc.xyLayout | Simple Function to Extract Carcass Counts

## -- I --

incGamma | Incomplete Gamma Function
initLayout | Create a Data Structure or Map for the Site Layout

## -- J --

junk | Section of Code that Serves No Purpose but for Package to Pass CRAN Check

## -- L --

layout_eagle | Example Bare Vector Format for Eagle Data
layout_polygon | Example Polygon Data for Site Layout
layout_simple | Example Simple Geometry Data Format for Site Layout
layout_xy | Example Data for Site Layout on an (x, y) Grid

## -- M --

MCI | Calculate posterior distribution of M and extract statistics (M* and CI)
modelFilter | Run Models through a Sieve to Filter out Dubious Fits
mod_all | Names of All the Available Models
mod_color | Vector of Colors Used in Graphs of Fitted Models
mod_lty | Vector of Line Types Used in Graphs of Fitted Models
mod_offset | Vector of GLM Offsets for Available Models
mod_standard | Vector of Names of Standard Models
mod_xy | Vector of Names of Models Available for Grid Layout
mpp2ddSim | Convert Distribution Name + Parameters to 'ddSim' Object
MpriorOK | Check validity of format of custom prior for M

## -- N --

natural | Vector of Names of Models with Natural Offset

## -- O --

off | Utility Function for Constructing Offsets for GLMs

## -- P --

parms2cof.matrix | Convert GLM Coefficients into Named Distribution Parameters
parm_name | List of Names of the Distribution Parameters Associated with Respective Models
parOK | Check Parameter Value Validity the Distribution
par_default | Default Graphics Parameters
pdd | Calculate Probability Functions for Distance Distributions
Plot | Plot dd and ddArray Objects
plot.dd | Plot dd and ddArray Objects
plot.ddArray | Plot dd and ddArray Objects
plot.dwphat | Plot dd and ddArray Objects
plot.fmod | Plot dd and ddArray Objects
plot.layoutSimple | Plot dd and ddArray Objects
plot.polygonLayout | Plot dd and ddArray Objects
plot.psiHat | Plot dd and ddArray Objects
pmb | Probability Distributions for Carcasses Versus Distance from Turbine
postM | Calculate posterior distribution of M and extract statistics (M* and CI)
postM.ab | Calculate posterior distribution of M and extract statistics (M* and CI)
prepmod | Internal Utility Function to Parse and Format Model for Calculating psihat
prepRing | Format a Search Layout into Rings for Analysis
prepRing.numeric | Format a Search Layout into Rings for Analysis
prepRing.polygonLayout | Format a Search Layout into Rings for Analysis
prepRing.shapeLayout | Format a Search Layout into Rings for Analysis
prepRing.simpleLayout | Format a Search Layout into Rings for Analysis
print.dd | Print S3 Objects in 'dwp' Package
print.ddArray | Print S3 Objects in 'dwp' Package
print.fmod | Print S3 Objects in 'dwp' Package
psi_extend | Simple Extension of a 'dd' Model beyond the Search Radius
pxep0 | Probability Distributions for Carcasses Versus Distance from Turbine
pxep012 | Probability Distributions for Carcasses Versus Distance from Turbine
pxep0123 | Probability Distributions for Carcasses Versus Distance from Turbine
pxep02 | Probability Distributions for Carcasses Versus Distance from Turbine
pxep1 | Probability Distributions for Carcasses Versus Distance from Turbine
pxep12 | Probability Distributions for Carcasses Versus Distance from Turbine
pxep123 | Probability Distributions for Carcasses Versus Distance from Turbine
pxep2 | Probability Distributions for Carcasses Versus Distance from Turbine
pxepi0 | Probability Distributions for Carcasses Versus Distance from Turbine

## -- Q --

qdd | Calculate Probability Functions for Distance Distributions

## -- R --

rcd | Calculate Probability Functions for Distance Distributions
rdd | Calculate Probability Functions for Distance Distributions
readCarcass | Import Carcass Observations Locations from Shape Files
rmat | Simple Utility Function Used in Optimizing the GLM

## -- S --

sieve_default | Test Criteria for Model Selection
sieve_win | Test Criteria for Model Selection within Search Area
stats | Display a Tables of Summary Statistics for Distance Distributions
stats.dd | Display a Tables of Summary Statistics for Distance Distributions
stats.ddArray | Display a Tables of Summary Statistics for Distance Distributions
stats.ddArraycc | Display a Tables of Summary Statistics for Distance Distributions
subset.shapeCarcass | Subset Data from an Imported and Formatted Shape File
subset.shapeLayout | Subset Data from an Imported and Formatted Shape File

## -- X --

xyr | Locations of All Carcasses in Grid Data

## -- misc --

[.ddArray | Subset a Set of Fitted Dispersion Models ('ddArray')
[.ddSim | Subset Simulated Dispersion Parameters while Preserving Attributes