R: Visualizing and Analyzing Animal Track Data

# Visualizing and Analyzing Animal Track Data

## Documentation for package ‘move’ version 4.2.7

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

A B C D E F G H I L M N O P R S T U misc

move-package | An overview of the functions in this package

## -- A --

angle | Headings of the segments of a movement track
angle-method | Headings of the segments of a movement track
as.data.frame | Returns a Data Frame
as.data.frame-method | Returns a Data Frame

## -- B --

brownian.bridge.dyn | Calculates a dynamic Brownian Bridge
brownian.bridge.dyn-method | Calculates a dynamic Brownian Bridge
brownian.motion.variance.dyn | Calculates the dynamic brownian motion variance
brownian.motion.variance.dyn-method | Calculates the dynamic brownian motion variance
burst | Bursting a track
burst-method | Bursting a track
burstId | Returns or sets the burstId
burstId-method | Returns or sets the burstId
burstId<- | Returns or sets the burstId
burstId<--method | Returns or sets the burstId

## -- C --

citations | Extract the citation of a Move or MoveStack object
citations-method | Extract the citation of a Move or MoveStack object
citations<- | Extract the citation of a Move or MoveStack object
citations<--method | Extract the citation of a Move or MoveStack object
contour | Contour plot
contour-method | Contour plot
coordinates | Extract the track coordinates from a Move or MoveStack object
coordinates-method | Extract the track coordinates from a Move or MoveStack object
corridor | Corridor behavior identification
corridor-method | Corridor behavior identification

## -- D --

DBBMM | The DBBMM class
DBBMM-class | The DBBMM class
DBBMMBurstStack | The DBBMMBurstStack class
DBBMMBurstStack-class | The DBBMMBurstStack class
DBBMMStack | The DBBMMStack class
dbbmmstack | Dynamic brownian bridges
DBBMMStack-class | The DBBMMStack class
dBGBvariance-class | The dynBGBvariance class
dBGBvarianceTmp-class | The dynBGBvariance class
dBMvariance-class | The dBMvariance class
dBMvarianceBurst-class | The dBMvariance class
dBMvarianceStack-class | The dBMvariance class
dBMvarianceTmp-class | The dBMvariance class
distance | Distance between the locations of a movement track
distance-method | Distance between the locations of a movement track
duplicatedDataExample | Tracking data example with duplicated timestamps
dynBGB | Calculation of the dynamic Bivariate Gausian Bridge
dynBGB-class | The dynBGB class
dynBGB-method | Calculation of the dynamic Bivariate Gausian Bridge
dynBGBvariance | Calculates the Bivariate Gaussian Bridge motion variance
dynBGBvariance-method | Calculates the Bivariate Gaussian Bridge motion variance

## -- E --

emd | Earth movers distance
emd-method | Earth movers distance
equalProj | Checks projections for being equal
equalProj-method | Checks projections for being equal

## -- F --

fishers | A MoveStack

## -- G --

getDataRepositoryData | Download data from the Movebank Data Repository
getDataRepositoryData-method | Download data from the Movebank Data Repository
getDuplicatedTimestamps | Identifies duplicated timestamps
getDuplicatedTimestamps-method | Identifies duplicated timestamps
getMotionVariance | Extracts the estimated motion variance
getMotionVariance-method | Extracts the estimated motion variance
getMovebank | Download Data from Movebank
getMovebank-method | Download Data from Movebank
getMovebankAnimals | Animals, tags and IDs in a Movebank study
getMovebankAnimals-method | Animals, tags and IDs in a Movebank study
getMovebankData | Download data from Movebank as a Move object
getMovebankData-method | Download data from Movebank as a Move object
getMovebankID | Movebank Study ID
getMovebankID-method | Movebank Study ID
getMovebankLocationData | Download location data from Movebank as a table
getMovebankLocationData-method | Download location data from Movebank as a table
getMovebankNonLocationData | Download non-location data from Movebank
getMovebankNonLocationData-method | Download non-location data from Movebank
getMovebankReferenceTable | Download all reference data of a Movebank study
getMovebankReferenceTable-method | Download all reference data of a Movebank study
getMovebankSensors | Information about Movebank sensors
getMovebankSensors-method | Information about Movebank sensors
getMovebankSensorsAttributes | Available attributes of Movebank sensors
getMovebankSensorsAttributes-method | Available attributes of Movebank sensors
getMovebankStudies | All studies on Movebank
getMovebankStudies-method | All studies on Movebank
getMovebankStudy | Returns information of a Movebank study
getMovebankStudy-method | Returns information of a Movebank study
getVolumeUD | Utilization distribution (UD)
getVolumeUD-method | Utilization distribution (UD)

## -- H --

hrBootstrap | Calculates and plots the area of the Minimum Convex Polygon of a track
hrBootstrap-method | Calculates and plots the area of the Minimum Convex Polygon of a track

## -- I --

idData | Obtain or replace the idData slot of a Move object
idData-method | Obtain or replace the idData slot of a Move object
idData<- | Obtain or replace the idData slot of a Move object
idData<--method | Obtain or replace the idData slot of a Move object
interpolateTime | Interpolate a trajectory
interpolateTime-method | Interpolate a trajectory

## -- L --

leroy | GPS track data from a fisher
leroydbbmm | Dynamic brownian bridges
leroydbgb | dynamic Bivariate Gausian Bridge example object
licenseTerms | Extract the license terms of a Move or MoveStack object
licenseTerms-method | Extract the license terms of a Move or MoveStack object
licenseTerms<- | Extract the license terms of a Move or MoveStack object
licenseTerms<--method | Extract the license terms of a Move or MoveStack object
lines | Plotting the lines of a track
lines-method | Plotting the lines of a track

## -- M --

move | Create a Move object
Move-class | The Move class
move-method | Create a Move object
move2ade | Convert a Move or MoveStack object to a SpatialPointsDataFrame
move2ade-method | Convert a Move or MoveStack object to a SpatialPointsDataFrame
MovebankLogin | The MovebankLogin class
movebankLogin | Login into Movebank
MovebankLogin-class | The MovebankLogin class
movebankLogin-method | Login into Movebank
MoveBurst-class | MoveBurst class
MoveStack | The MoveStack class
moveStack | Creating a MoveStack
MoveStack-class | The MoveStack class
moveStack-method | Creating a MoveStack

## -- N --

n.indiv | Extract the number of individuals of a MoveStack
n.indiv-method | Extract the number of individuals of a MoveStack
n.locs | Extract the number of locations of a Move or MoveStack object
n.locs-method | Extract the number of locations of a Move or MoveStack object
namesIndiv | Extract the names of the individuals of a move or moveStack object
namesIndiv-method | Extract the names of the individuals of a move or moveStack object

## -- O --

outerProbability | Calculates the probabilities at the edges of a raster
outerProbability-method | Calculates the probabilities at the edges of a raster

## -- P --

plot | Plotting track or raster
plot-method | Plotting track or raster
plotBursts | Plotting the centroids of a bursted track
plotBursts-method | Plotting the centroids of a bursted track
points | Plotting the points of a track
points-method | Plotting the points of a track

## -- R --

raster | Extract raster topology from DBBMM or dynBGB
raster-method | Extract raster topology from DBBMM or dynBGB
raster2contour | Convert raster to contour lines
raster2contour-method | Convert raster to contour lines

## -- S --

searchMovebankStudies | Search for a study on Movebank
searchMovebankStudies-method | Search for a study on Movebank
seglength | Segment lengths of a track
seglength-method | Segment lengths of a track
sensor | Extract the sensor of a Move unUsedRecords object
sensor-method | Extract the sensor of a Move unUsedRecords object
show | Show a Move, DBBMM, dynBGB object
show-method | Show a Move, DBBMM, dynBGB object
speed | Speed between the locations of a movement track
speed-method | Speed between the locations of a movement track
split | Splitting a MoveStack, MoveBurst or DBBMMStack
split-method | Splitting a MoveStack, MoveBurst or DBBMMStack
spTransform | Transform projection of movement track
spTransform-method | Transform projection of movement track
summary | Summary of Move, DBBMM, dynBGB objects
summary-method | Summary of Move, DBBMM, dynBGB objects

## -- T --

thinDistanceAlongTrack | Thinning trajectories to a specific time interval or distance.
thinDistanceAlongTrack-method | Thinning trajectories to a specific time interval or distance.
thinTrackTime | Thinning trajectories to a specific time interval or distance.
thinTrackTime-method | Thinning trajectories to a specific time interval or distance.
timeLag | Time lags between the locations of a movement track
timeLag-method | Time lags between the locations of a movement track
timestamps | Extract or set the timestamps of a Move or MoveStack object
timestamps-method | Extract or set the timestamps of a Move or MoveStack object
timestamps<- | Extract or set the timestamps of a Move or MoveStack object
timestamps<--method | Extract or set the timestamps of a Move or MoveStack object
trackId | Returns trackId
trackId-method | Returns trackId
turnAngleGc | Turning angles on great circle tracks
turnAngleGc-method | Turning angles on great circle tracks

## -- U --

UDStack | Creating UDStack objects
UDStack-class | The UD class
UDStack-method | Creating UDStack objects
unUsedRecords | Extracts or creates the unUsedRecords
unUsedRecords-method | Extracts or creates the unUsedRecords
unUsedRecords<- | Extracts or creates the unUsedRecords
unUsedRecords<--method | Extracts or creates the unUsedRecords

## -- misc --

.MoveGeneral-class | The Move class
.MoveTrack | The Move class
.MoveTrack-class | The Move class
.MoveTrackSingle | The Move class
.MoveTrackSingle-class | The Move class
.MoveTrackSingleBurst-class | MoveBurst class
.MoveTrackStack-class | The MoveStack class
.UD | The UD class
.UD-class | The UD class
.UDBurstStack-class | The UD class
.UDStack-class | The UD class
.unUsedRecords-class | The .unUsedRecords and .unUsedRecordsStack class
.unUsedRecordsStack-class | The .unUsedRecords and .unUsedRecordsStack class
[,MoveStack,ANY,ANY-class | The MoveStack class
[-method | Subset movement tracks
[<--method | Subset movement tracks
[[-method | Subset movement tracks