addAllele               Add allele
as.data.frame.ped       Convert ped to data.frame
as.matrix.ped           Convert 'ped' to matrix
as.ped                  Conversions to ped objects
as_kinship2_pedigree    Convert pedigree to kinship2 format
connectedComponents     Connected pedigree components
distributeMarkers       Distribute markers evenly along a set of
                        chromosomes
expectedHomozygosity    Expected homozygosity and heterozygosity
extractSingletons       Extract singletons from pedigree
famid                   Family identifier
founderInbreeding       Inbreeding coefficients of founders
freqDatabase            Allele frequency database
getAlleles              Allele matrix manipulation
getComponent            Pedigree component
getGenotypes            Genotype matrix
getMap                  Tabulate marker positions
getSex                  Get or set the sex of pedigree members
harmoniseMarkers        Harmonise markers across components in a ped
                        list
inbreedingLoops         Pedigree loops
is.marker               Test if something is a marker
is.ped                  Is an object a 'ped' object?
isHomozygous            Find homozygous genotypes
locusAttributes         Get or set locus attributes
marker                  Marker objects
marker_attach           Attach markers to pedigrees
marker_getattr          Get marker attributes
marker_inplace          Set marker attributes
marker_prop             Marker properties
marker_select           Select or remove attached markers
marker_setattr          Set marker attributes
maskPed                 Mask and unmask pedigree datasets
mendelianCheck          Check for Mendelian errors
mergePed                Merge two pedigrees
nMarkers                The number of markers attached to a pedigree
newMarker               Internal marker constructor
newPed                  Internal ped constructor
ped                     Pedigree construction
ped_basic               Create basic pedigrees
ped_complex             Complex pedigree structures
ped_internal            Internal ordering of pedigree members
ped_modify              Add/remove pedigree members
ped_subgroups           Pedigree subgroups
ped_utils               Pedigree utilities
plot.ped                Plot pedigree
plotPedList             Plot a collection of pedigrees.
plotmethods             Internal plot methods
print.nucleus           S3 methods
print.ped               Printing pedigrees
randomPed               Random pedigree
readPed                 Read a pedigree from file
relabel                 Get or modify pedigree labels
sameGenotype            Find markers for which two individuals have the
                        same genotype
setMutmod               Set a mutation model
setSNPs                 Attach SNP loci to a pedigree
sortGenotypes           Sort the alleles in each genotype
swapGenotypes           Swap genotypes between individuals
transferMarkers         Transfer marker data
validatePed             Pedigree errors
writePed                Write a pedigree to file
