pedtools-package	pedtools-package
.annotatePed	plotmethods
.drawPed	plotmethods
.pedAlignment	plotmethods
.pedAnnotation	plotmethods
.pedScaling	plotmethods
addAllele	addAllele
addChild	ped_modify
addChildren	ped_modify
addDaughter	ped_modify
addMarker	marker
addMarkers	marker_attach
addParents	ped_modify
addSibling	ped_modify
addSon	ped_modify
afreq	marker_getattr
afreq.list	marker_getattr
afreq.marker	marker_getattr
afreq.ped	marker_getattr
afreq<-	marker_inplace
afreq<-.list	marker_inplace
afreq<-.marker	marker_inplace
afreq<-.ped	marker_inplace
alleles	marker_getattr
alleles.list	marker_getattr
alleles.marker	marker_getattr
alleles.ped	marker_getattr
allowsMutations	marker_prop
allowsMutations.default	marker_prop
allowsMutations.list	marker_prop
allowsMutations.marker	marker_prop
allowsMutations.ped	marker_prop
ancestors	ped_subgroups
ancestralPed	ped_basic
as.data.frame.ped	as.data.frame.ped
as.matrix.ped	as.matrix.ped
as.ped	as.ped
as.ped.data.frame	as.ped
as_kinship2_pedigree	as_kinship2_pedigree
avuncularPed	ped_basic
branch	ped_modify
breakLoops	inbreedingLoops
children	ped_subgroups
chrom	marker_getattr
chrom.list	marker_getattr
chrom.marker	marker_getattr
chrom.ped	marker_getattr
chrom<-	marker_inplace
chrom<-.list	marker_inplace
chrom<-.marker	marker_inplace
chrom<-.ped	marker_inplace
commonAncestors	ped_subgroups
commonDescendants	ped_subgroups
connectedComponents	connectedComponents
cousinPed	ped_basic
descendants	ped_subgroups
descentPaths	ped_subgroups
distributeMarkers	distributeMarkers
doubleCousins	ped_complex
doubleFirstCousins	ped_complex
drawPed	plot.ped
emptyMarker	marker_prop
emptyMarker.default	marker_prop
emptyMarker.list	marker_prop
emptyMarker.marker	marker_prop
emptyMarker.ped	marker_prop
expectedHeterozygosity	expectedHomozygosity
expectedHomozygosity	expectedHomozygosity
extractSingletons	extractSingletons
famid	famid
famid.ped	famid
famid<-	famid
famid<-.ped	famid
father	ped_subgroups
females	ped_subgroups
findLoopBreakers	inbreedingLoops
findLoopBreakers2	inbreedingLoops
founderInbreeding	founderInbreeding
founderInbreeding<-	founderInbreeding
founders	ped_subgroups
foundersFirst	ped_internal
freqDatabase	freqDatabase
fullSibMating	ped_complex
generations	ped_utils
genotype	marker_getattr
genotype.marker	marker_getattr
genotype.ped	marker_getattr
genotype<-	marker_inplace
genotype<-.marker	marker_inplace
genotype<-.ped	marker_inplace
getAlleles	getAlleles
getComponent	getComponent
getFreqDatabase	freqDatabase
getGenotypes	getGenotypes
getLocusAttributes	locusAttributes
getMap	getMap
getMarkers	marker_select
getSex	getSex
grandparents	ped_subgroups
halfCousinPed	ped_basic
halfSibPed	ped_basic
halfSibStack	ped_complex
halfSibTriangle	ped_complex
harmoniseMarkers	harmoniseMarkers
hasCommonAncestor	ped_utils
hasInbredFounders	ped_utils
hasLinkedMarkers	getMap
hasMarkers	nMarkers
hasParentsBeforeChildren	ped_internal
hasSelfing	ped_utils
hasUnbrokenLoops	ped_utils
inbreedingLoops	inbreedingLoops
internalID	ped_internal
is.marker	is.marker
is.markerList	is.marker
is.ped	is.ped
is.pedList	is.ped
is.singleton	is.ped
isHomozygous	isHomozygous
isXmarker	marker_prop
isXmarker.default	marker_prop
isXmarker.list	marker_prop
isXmarker.marker	marker_prop
isXmarker.ped	marker_prop
labels.list	relabel
labels.ped	relabel
leaves	ped_subgroups
linearPed	ped_basic
locusAttributes	locusAttributes
males	ped_subgroups
marker	marker
marker_attach	marker_attach
marker_getattr	marker_getattr
marker_inplace	marker_inplace
marker_prop	marker_prop
marker_select	marker_select
marker_setattr	marker_setattr
maskPed	maskPed
mendelianCheck	mendelianCheck
mergePed	mergePed
mother	ped_subgroups
mutmod	marker_getattr
mutmod.list	marker_getattr
mutmod.marker	marker_getattr
mutmod.ped	marker_getattr
mutmod<-	marker_inplace
mutmod<-.list	marker_inplace
mutmod<-.marker	marker_inplace
mutmod<-.ped	marker_inplace
nAlleles	marker_prop
nAlleles.default	marker_prop
nAlleles.list	marker_prop
nAlleles.marker	marker_prop
nAlleles.ped	marker_prop
name	marker_getattr
name.list	marker_getattr
name.marker	marker_getattr
name.ped	marker_getattr
name<-	marker_inplace
name<-.list	marker_inplace
name<-.marker	marker_inplace
name<-.ped	marker_inplace
nChildren	ped_utils
nephews_nieces	ped_subgroups
newMarker	newMarker
newPed	newPed
niblings	ped_subgroups
nMarkers	nMarkers
nonfounders	ped_subgroups
nTyped	marker_prop
nTyped.default	marker_prop
nTyped.list	marker_prop
nTyped.marker	marker_prop
nTyped.ped	marker_prop
nuclearPed	ped_basic
parents	ped_subgroups
parentsBeforeChildren	ped_internal
ped	ped
pedsize	ped_utils
pedtools	pedtools-package
ped_basic	ped_basic
ped_complex	ped_complex
ped_internal	ped_internal
ped_modify	ped_modify
ped_subgroups	ped_subgroups
ped_utils	ped_utils
peelingOrder	ped_utils
piblings	ped_subgroups
plot.list	plot.ped
plot.ped	plot.ped
plot.pedList	plot.ped
plotmethods	plotmethods
plotPedList	plotPedList
posMb	marker_getattr
posMb.marker	marker_getattr
posMb.ped	marker_getattr
posMb<-	marker_inplace
posMb<-.marker	marker_inplace
posMb<-.ped	marker_inplace
print.nucleus	print.nucleus
print.ped	print.ped
quadHalfFirstCousins	ped_complex
randomPed	randomPed
readFreqDatabase	freqDatabase
readPed	readPed
relabel	relabel
removeGenotypes	getAlleles
removeIndividuals	ped_modify
removeMarkers	marker_select
reorderPed	ped_internal
restorePed	as.matrix.ped
sameGenotype	sameGenotype
selectMarkers	marker_select
selfingPed	ped_basic
setAfreq	marker_setattr
setAlleleLabels	marker_setattr
setAlleles	getAlleles
setChrom	marker_setattr
setFounderInbreeding	founderInbreeding
setFreqDatabase	freqDatabase
setGenotype	marker_setattr
setLocusAttributes	locusAttributes
setMap	getMap
setMarkername	marker_setattr
setMarkers	marker_attach
setMutmod	setMutmod
setPosition	marker_setattr
setSex	getSex
setSNPs	setSNPs
siblings	ped_subgroups
singleton	ped
singletons	ped
sortGenotypes	sortGenotypes
spouses	ped_subgroups
subnucs	ped_utils
subset.ped	ped_modify
swapGenotypes	swapGenotypes
swapSex	getSex
tieLoops	inbreedingLoops
transferMarkers	transferMarkers
trim	ped_modify
typedMembers	ped_subgroups
unmaskPed	maskPed
unrelated	ped_subgroups
untypedMembers	ped_subgroups
validatePed	validatePed
whichMarkers	marker_select
writeFreqDatabase	freqDatabase
writePed	writePed
