analyzeGOSeurat         standard seurat analysis on GO_seurat object
cellTypeGOCorr          calculate correlation between cell types
                        represented by scaled GO, per-species
crossSpeciesCellTypeGOCorr
                        calculate cross-species correlation between
                        cell types represented by scaled GO
dme_subset              Drosophila gut scRNA-seq data, 10X Chromium
                        Subset to 45 cells per cell type as an example
                        data
dme_tbl                 Drosophila EMSEMBL gene and GO annotation,
                        subset to genes present in 'dme_subset'
ensemblToGo             get requested ensembl ID to GO mapping table
getCellTypeGO           get per cell type average scaled vector of GO
                        terms
getCellTypeSharedGO     get shared up and down regulated GO terms for
                        all pairs of cell types
getCellTypeSharedTerms
                        query co-up and co-down regulated GO terms from
                        certain cell type pairs
globalvariables         record some global variables: pre-defined
                        column name in biomaRt query and markers
makeGOSeurat            create a seurat object with GO terms
mmu_subset              Mouse stomach and intestine scRNA-seq data,
                        microwell-seq Subset to 50 cells per cell type
                        as an example data
mmu_tbl                 Mouse EMSEMBL gene and GO annotation, subset to
                        genes present in 'mmu_subset'
plotCellTypeCorrHeatmap
                        plot clustered heatmap for cell type corr
plotCellTypeSankey      plot Sankey diagram for cell type links above a
                        certain threshould
