Package: seroreconstruct
Type: Package
Title: Reconstructing Antibody Dynamics to Estimate the Risk of
        Influenza Virus Infection
Version: 1.1.5
Authors@R: 
    c(person(given = "Tim",
             family = "Tsang",
             role = c("aut", "cre"),
             email = "timkltsang@gmail.com",
             comment = c(ORCID = "0000-0001-5037-6776")))
Maintainer: Tim Tsang <timkltsang@gmail.com>
Description: A Bayesian framework for inferring influenza infection status from
    serial antibody measurements. Jointly estimates season-specific infection
    probabilities, antibody boosting and waning after infection, and baseline
    hemagglutination inhibition (HAI) titer distributions via Markov chain
    Monte Carlo (MCMC). Supports multi-season analysis and subgroup
    comparisons via a group_by interface. See Tsang et al. (2022)
    <doi:10.1038/s41467-022-29310-8> for methodological details.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: TRUE
URL: https://github.com/timktsang/seroreconstruct
BugReports: https://github.com/timktsang/seroreconstruct/issues
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 1.0.9), RcppParallel
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
Config/testthat/edition: 3
VignetteBuilder: knitr
SystemRequirements: TBB
RoxygenNote: 7.3.3
NeedsCompilation: yes
Packaged: 2026-03-30 14:58:37 UTC; timtsang
Author: Tim Tsang [aut, cre] (ORCID: <https://orcid.org/0000-0001-5037-6776>)
Repository: CRAN
Date/Publication: 2026-04-03 08:50:03 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-25 12:45:13 UTC; unix
Archs: seroreconstruct.so.dSYM
