VCFheader report

Input source
simple.vcf
Fileformat
VCFv4.3
File date
20090805
Source
myImputationProgramV3.1
Reference
file:///seq/references/1000GenomesPilot-NCBI36.fasta
Samples
3

## Contigs

1 contig declared in the header. Showing the first 1. Contig lengths provided for 1 of 1. Assembly labels provided for 1 of 1. MD5 values provided for 1 of 1. Example ID: 20.

ID | length | assembly | md5 | species | taxonomy
--- | --- | --- | --- | --- | ---
20 | 62435964 | B36 | f126cdf8a6e0c7f379d618ff66beb2da | Homo sapiens | x

## FILTER definitions

ID | Description
--- | ---
q10 | Quality below 10
s50 | Less than 50% of samples have data

## ALT definitions

None

## INFO fields

ID | Type | Number | Description
--- | --- | --- | ---
NS | Integer | 1 | Number of Samples With Data
DP | Integer | 1 | Total Depth
AF | Float | A | Allele Frequency
AA | String | 1 | Ancestral Allele
DB | Flag | 0 | dbSNP membership, build 129
H2 | Flag | 0 | HapMap2 membership

Hover for a quick summary. Click a term to read the full available definition.

## FORMAT fields

ID | Type | Number | Description
--- | --- | --- | ---
GT | String | 1 | Genotype
GQ | Integer | 1 | Genotype Quality
DP | Integer | 1 | Read Depth
HQ | Integer | 2 | Haplotype Quality

FORMAT keys use genotype-key definitions from the VCF specification. Hover for a quick summary. Click a term to read the full available definition.

## Other header entries

None

Click to read more
Definition