adjust_taxonomies       Adjust Taxonomies
binomial_test           Binomial Test
blast_command_found     Check BLAST Installation
blast_version           Get BLAST Version
circle                  Draw Circle Polygon
contains_wildcards      Check Whether DNA Sequences Contain Wildcard
                        Characters
coordinates             Generate Circular Coordinates
decode_quality_scores   Decode DNA Sequence Quality Scores
detection               Grouped Detection Plot
expand_taxonomies       Expand Taxonomies
filter_sequences        Filter DNA Sequences by PCR Replicates
format_reference_database
                        Format Reference Databases
get_consensus_taxonomy
                        Get Consensus Taxonomy from Taxonomic Strings
get_taxonomic_level     Get Specified Taxonomic Level from Taxonomic
                        Strings
get_taxonomies.IUCN     Get Taxonomies from IUCN Red List Files
get_taxonomies.species_binomials
                        Get NCBI Taxonomies from Species Binomials
isolate_amplicon        Trim DNA Sequences to an Amplicon Region Using
                        Forward and Reverse Primer Sequences
local_taxa_tool         Perform Geographically-Conscious Taxonomic
                        Assignment
merge_pairs             Merge Forward and Reverse DNA Sequence Reads
proportion              Grouped Proportion Plot
read.fasta              Read FASTA Files
read.fastq              Read FASTQ Files
reverse_complement      Get the Reverse Complement of a DNA Sequence
sector                  Draw Sector Polygon
singular.detection      Singular Detection Plot
singular.proportion     Singular Proportion Plot
substitute_wildcards    Substitute Wildcard Characters in a DNA
                        Sequence
summarize_quality_scores
                        Summarize Quality Scores
template                Initiate Template Plot
trim_sequences          Trim Target Nucleotide Sequence from DNA
                        Sequences
truncate_and_merge_pairs
                        Truncate and Merge Forward and Reverse DNA
                        Sequence Reads
truncate_sequences.length
                        Truncate DNA Sequences to Specified Length
truncate_sequences.probability
                        Truncate DNA Sequences at Specified Probability
                        that All Bases were Called Correctly
truncate_sequences.quality_score
                        Truncate DNA Sequences at Specified Quality
                        Score
write.fasta             Write FASTA Files
write.fastq             Write FASTQ Files
