R: A Biomarker Validation Approach for Classification and Predicting Survival Using Metabolomics Signature

# A Biomarker Validation Approach for Classification and Predicting Survival Using Metabolomics Signature

## Documentation for package ‘MetabolicSurv’ version 1.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

CVLasoelacox | Cross Validations for Lasso Elastic Net Survival predictive models and Classification
cvle | Constructor for the cvle class
cvle-class | The cvle Class.
CVMajorityvotes | Cross validation for majority votes
CVMetSpecificCoxPh | Cross validation for the Metabolite specific analysis
cvmm | Constructor for the cvmm class
cvmm-class | The cvmm Class.
cvmv | Constructor for the cvmv class
cvmv-class | The cvmv Class.
CVPcaPls | Cross Validations for PCA and PLS based methods
cvpp | Constructor for the cvpp class
cvpp-class | The cvpp Class.
cvsim | Constructor for the cvsim class
cvsim-class | The cvsim Class.
CVSimet | Cross validation for sequentially increases metabolites
DataHR | Survival and Prognostic Data .
DistHR | Null Distribution of the Estimated HR
EstimateHR | Classification, Survival Estimation and Visualization
fcv | Constructor for the fcv class
fcv-class | The fcv Class.
Icvlasoel | Inner and Outer Cross Validations for Lasso Elastic Net Survival predictive models and Classification
Lasoelacox | Wapper function for glmnet
Majorityvotes | Classifiction for Majority Votes
MetabolicSurv | MetabolicSurv: A biomarker validation approach for predicting survival using metabolic signature.
MetFreq | Frequency of Selected Metabolites from the LASSO, Elastic-net Cross-Validation
ms | The ms class
MSData | Generate Artificial Metabolic Survival Data
MSpecificCoxPh | Metabolite by metabolite Cox proportional analysis
perm | Constructor for the perm class
perm-class | The perm Class.
plot-method | Plot method for cvle class
plot-method | Plot method for cvmm class
plot-method | Plot method for cvmv class
plot-method | Plot method for cvpp class
plot-method | Plot method for cvsim class
plot-method | Plot method for fcv class
plot-method | Plot method for ms class
plot-method | Plot method for perm class
show-method | Show method for cvle class
show-method | Show method for cvmm class
show-method | Show method for cvmv class
show-method | Show method for cvpp class
show-method | Show method for cvsim class
show-method | Show method for fcv class
show-method | Show method for ms class
show-method | Show method for perm class
SIMet | Sequential Increase in Metabolites for the PCA or PLS classifier
summary-method | Summary method for cvle class
summary-method | Summary method for cvmm class
summary-method | Summary method for cvmv class
summary-method | Summary method for cvpp class
summary-method | Summary method for cvsim class
summary-method | Summary method for fcv class
summary-method | Summary method for ms class
summary-method | Summary method for perm class
SurvPcaClass | Survival PCA and Classification for metabolic data
SurvPlsClass | Survival PLS and Classification for metabolic data