combine.morpho          Combine Two Morpho Objects
convergent_evol         Determines the number of convergently evolved
                        traits
find_path_to_tip        Determines the route (nodes and branches) for a
                        tip in a phylogenetic tree
get.reconstructed       Add reconstructed tree and matrix to morpho
                        object
get_gamma_rates         Get discrete gamma rates
get_lognormal_rates     Get discrete log-normal rates
morpho                  Morpho object
morpho_data             Example morpho dataset
morphsim_fossilsim      Match sampled ancestor labels
plot.morpho             Plot full evolutionary history
plotMorphoGrid          Plots morphological matrix
reconstruct.matrix      Get reconstructed matrix
reconstruct.tree        Color branches for plotting a reconstructed
                        tree
sim.missing.data        Remove morphological character data
sim.morpho              Simulate characters along branches in a tree
stats.morpho            Calculates statistics for a morpho object
symmetric.Q.matrix      Generate a symmetric Q matrix
write.recon.matrix      Write reconstructed character matrix to file
write.recon.tree        Write reconstructed tree to file
write.recon.tsv         Write the taxa ages of reconstructed tree
write.tsv               Write the taxa ages
