Package: rsahmi
Title: Single-Cell Analysis of Host-Microbiome Interactions
Version: 0.0.2
Authors@R: 
    person("Yun", "Peng", , "yunyunp96@163.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2801-3332"))
Description: A computational resource designed to accurately detect microbial
    nucleic acids while filtering out contaminants and false-positive taxonomic
    assignments from standard transcriptomic sequencing of mammalian tissues.
    For more details, see Ghaddar (2023) <doi:10.1038/s43588-023-00507-1>. This
    implementation leverages the 'polars' package for fast and systematic
    microbial signal recovery and denoising from host tissue genomic sequencing.
License: MIT + file LICENSE
ByteCompile: true
Encoding: UTF-8
OS_type: unix
RoxygenNote: 7.3.2
SystemRequirements: kraken2, seqkit
Imports: blit (>= 0.1.0), cli, rlang (>= 1.1.0), ShortRead, utils
Suggests: polars (>= 0.17.0)
Additional_repositories: https://community.r-multiverse.org
URL: https://github.com/Yunuuuu/rsahmi
BugReports: https://github.com/Yunuuuu/rsahmi/issues
NeedsCompilation: no
Packaged: 2025-03-21 18:48:11 UTC; yun
Author: Yun Peng [aut, cre] (<https://orcid.org/0000-0003-2801-3332>)
Maintainer: Yun Peng <yunyunp96@163.com>
Repository: CRAN
Date/Publication: 2025-03-24 12:00:05 UTC
Built: R 4.6.0; ; 2026-04-26 01:50:34 UTC; unix
