Retrieve, Transform and Analyze the Barcode of Life Data Systems Data


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Documentation for package ‘BOLDconnectR’ version 1.0.0

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bold.analyze.align Transform and align the sequence data retrieved from BOLD
bold.analyze.diversity Create a biodiversity profile of the retrieved data
bold.analyze.map Visualize BIN occurrence data on maps
bold.analyze.tree Analyze and visualize the multiple sequence alignment
bold.apikey Set the BOLD private data API key
bold.data.summarize Generate specific summaries from the downloaded BCDM data
bold.export Export files generated by BOLDconnectR
bold.fetch Retrieve data from the BOLD database
bold.fields.info Retrieve metadata of the BOLD data fields
bold.full.search Search user based (private) and publicly available data on the BOLD database
bold.public.search Search publicly available data on the BOLD database
test.data Canadian spider data by Blagoev et al.(2015)