ca4f9993085ca62da68f85905ea45a1c *DESCRIPTION
d16971e08f500ee82788308d3861eaf2 *NAMESPACE
4baa894e4f40a456c670b503451076d0 *NEWS.md
9a086249939630c984ab06e71c3130d4 *R/batch.R
0d28102bc0c2673ddece2e55884a6dc8 *R/cache.R
7cdb0adcd584aa30dcac8c75319de380 *R/calibrate.R
3fa31113cc6aa7a4d5ddf8ac4ec54eb6 *R/class-CalibrationSet.R
a6854a329366625ece08fc08b07bfd5c *R/class-EffectScenario.R
7fe8da070762c07227e3defda0555a0f *R/class-ExposureSeries.R
41cd6445ce35de7e95f3ff932650707b *R/class-ParameterSet.R
160c6b8401c38858112ce4150274365f *R/class-Transferable.R
a5cffb6d174194d5b6dba13dd851fd12 *R/data.R
fa1179d16c031b1ec10aa811ff2e82f3 *R/dose_response.R
966b1cc1c84281dadf3435b80d62630a *R/effect.R
da5f2420ae5431e7ad9776028b1e66dd *R/epx.R
f8c0b2cfed3aa3960fcfad873f46ab47 *R/explore_space.R
07ddee781ddb90aeeb5009508319ca72 *R/fit_growth.R
b9bc7c30f7a95193d0b324c9d182c463 *R/fit_tktd.R
695b8a3ad8af9f9f10d3e82326441a7c *R/fx.R
58fb4fbc8bbb9a1476bb5e10e19fdde9 *R/get.R
818d2f35992b4c7a1765b64b7b2a8eba *R/get_param.R
344f94101414db374d7d5d3fd7f35f7a *R/get_tag.R
63d40f7815aed9b9f908a93d0e8daf06 *R/get_times.R
51e8b57f48eb16aff9211cfd5bb60a55 *R/globals.R
d3ae344c2b3be608166d15e0dcfcef0b *R/has.R
ac96951ae3ff41702a635716a13284a3 *R/import_morse.R
c3919749631e62815f27154e241a03f0 *R/import_toxswa.R
d9af515cbb533da4bb26cfeb8ca188fc *R/is.R
ec7ff06e1cb364cb4dc53cb590621601 *R/lik_profile.R
afe0788da9bd4dd14cc007b20fb0fe3c *R/log.R
1648575cdb11299751d28292c536a331 *R/man-deb.R
aefe2d8ed914f11f39cc7a57e7d11cbd *R/man-lemna.R
4f134a0e899585dcbcbf150d99736268 *R/man-macrophytes.R
9b520f591d5bc5fe606c6ba22eea523d *R/model-algae.R
743214425c5b0022f7c7c2e9d7ebe5b7 *R/model-deb_abj.R
98fc1dc1ffe26572ad7883a0b2af0066 *R/model-deb_daphnia.R
6c9aff000b115bcee76d7c1cd7fedb15 *R/model-debtox.R
3d50818cb858272a6716a504628e5196 *R/model-guts.R
750f15a130a9924bca2a1dec5ecf5fde *R/model-guts_red.R
c8269fa68abeaa7dad992b4cfbc73c44 *R/model-lemna_schmitt.R
a0269eb3fbeecbbf45520763a7ec7155 *R/model-lemna_setac.R
15807e56a89d1d4e06dd9c532f037697 *R/model-magma.R
9426ed393b27af79a6f66f81f2313102 *R/numerics.R
5168ef542d279322723e0cd3d372dc0a *R/package.R
bd1ab6ead2b74065aaa2630dcb758fc1 *R/pll.R
48c4e8629ac80b327022a78de94e60b2 *R/plot.R
4c99a03f945431172c92f5449edef8a6 *R/plotting.r
28752f15477ce67b41f3b8d1783f729d *R/pull.R
40c673d552e5454eaf23746debb192ba *R/sequence.R
5208531e42b10d695eaf199641687777 *R/set.R
80e71466892e423a3d4c6cf54068d82c *R/set_bounds.R
39baecff12cb5ec8629d87a7d5875cab *R/set_exposure.R
1db2ab4f363720fdbb85b492ed123b26 *R/set_forcings.R
a4f21d8a4ba707f84e2aa88e8bf04a17 *R/set_init.R
6228eeb44d8c0fdc0bbd03382f12c27d *R/set_param.R
936ae152311888bc71c49ffbd4dda363 *R/set_times.R
1d211db3ea27827bc289ba3f514f8324 *R/set_transfer.R
d433688e92810669c94fc64be1c6ca71 *R/set_window.R
8709e62e24f56746c6d498ee54045d4f *R/show.R
00e738c0e6425d115ecef8866432b621 *R/simulate.R
38e13d8008d02493d11fb142cafae1cd *R/solver.R
eb87dbb5d725914712ebf378bd46e4b9 *R/survival.R
bf9f120af5343b8557754dde5c851010 *R/tox_data.R
776505bdb77be8424d32380f69c88c9f *R/utils-pipe.R
98a344e28578097a9c04147b993407ea *README.md
d54042561b90aafd8a9a202ea63e1e4b *build/partial.rdb
4f90931c83996bccb0793cd2b79c45a4 *build/vignette.rds
08d25350f23cf55d7d18ceca4526c8c5 *data/americamysis.rda
9b7edac39eee7f8c01fcc56ed51f589f *data/dmagna.rda
c1dd6bf0b67a08f3beea2655e6c762c6 *data/focusd1.rda
8b4b6b9d240d496a3c2c041ce03636c4 *data/metsulfuron.rda
e68e2a3a9076e67294f0e68ecae92675 *data/minnow_it.rda
b7e6561161c5185c4d92d0a3d7b7e13c *data/minnow_sd.rda
c9c839432722925d28c50d6a4c239821 *data/ringtest_c.rda
33fb288e609feabbf1cada6a355b85f6 *data/ringtest_it.rda
4da5a1b15b5875003bfc4f1d96013404 *data/ringtest_sd.rda
22fb20e4e5e371ce2a1d16e71cc87c78 *data/rsubcapitata.rda
df05922fb2d450600f82c80534a060ae *data/schmitt2013.rda
2c7156184640cb2edfbd7016b8006b0c *inst/debtox_license.txt
a719915c11f963bd304e7cd74b856588 *inst/doc/cvasi-1-manual.R
86e6a364596e52df2d798adede16922f *inst/doc/cvasi-1-manual.Rmd
7f7c6bbde0681164beaedf0072489cc4 *inst/doc/cvasi-1-manual.html
c5087040d97878fcfa684cc6c79eeba4 *inst/doc/cvasi-2-howto.R
331d941afea7de6a00c0ccfc63d6a663 *inst/doc/cvasi-2-howto.Rmd
2621b0bd2bfd8669b06cb0b9f13687e3 *inst/doc/cvasi-2-howto.html
1a4deffb1fe25a3070f15aac93845f19 *man/Algae-models.Rd
94e24c037f912888f178a881c612e8f3 *man/Algae_Simple.Rd
aa0c137acb3cfaebd42970f688b444b6 *man/Algae_TKTD.Rd
6a0f80850b4136890857ce5561a11331 *man/Algae_Weber.Rd
10df5bea5502f0d068dad63a2835c9dc *man/CalibrationSet.Rd
2190f274f4010450c5578f310e184643 *man/DEB-models.Rd
6420e7d425f33f9ecfb3010e7228e4e9 *man/DEB_abj.Rd
d2a8f80b1c54128209a4bed05ae737c2 *man/DEBtox.Rd
00f7b2553ae40b75deca28ea98227f7d *man/ExposureSeries.Rd
bae276926f9d575c21e3fe9adf0865e4 *man/GUTS-RED-models.Rd
4eccf07c691d5793613f349d4155a308 *man/GUTS_IT.Rd
4626c57cd92ac04a2eb7a5992eb17f57 *man/GUTS_RED_IT.Rd
348db473845c6d1de3925fdffda5ea4b *man/GUTS_RED_SD.Rd
762d3427c07e92aefba9fe9d30f874af *man/GUTS_SD.Rd
1d19467309d9a99f556a53d23ac447e9 *man/Lemna-models.Rd
cf8ffd46abd1af31a76864477cf57945 *man/Lemna_SETAC.Rd
6215a9bb382c5b8e59d6d692d6d2f945 *man/Lemna_Schmitt.Rd
d6772d05476c338f95421f585fef0f43 *man/Macrophyte-models.Rd
7cef0fd79745fd023d3cd3950027d2f4 *man/Magma-class.Rd
8e0d578966708fc45c79010cfb143ae4 *man/Magma.Rd
47e3d48222adb91ca685efad887a14ac *man/Scenarios.Rd
90ae2869bbcef1940a9fd37293b1c507 *man/Transferable.Rd
61e55f7de961a8cb4602d576ba635595 *man/americamysis.Rd
6ebc3e3224fdbedf531498488a054a03 *man/batch.Rd
9c6c7895671f2b1b88c62f624fd1ce21 *man/cache_controls.Rd
6521365a013d25e7e3cdafa3d40900bd *man/calibrate.Rd
81d53be0434665944154e37500db1b95 *man/ci_from_hessian.Rd
8fb291c9800b3b623c9ed2c1e8164aab *man/diagnostics.Rd
2977ee8517ec20ce9307538847fc7fa5 *man/dmagna.Rd
e02a8a55b079c74f463cdf9d32516aee *man/dose_response.Rd
23cf77b6e2a96858d35e27aafe5fa941 *man/effect.Rd
a26bdf80b1f5d18b0a21d5cada7f3353 *man/epx.Rd
b1f46f0d39c0efa481d5d5d2bb23b80f *man/epx_mtw.Rd
94593b5576dbf3d14395903b1443178b *man/explore_space.Rd
8b9317939d546a8bd0ae4da30c658f78 *man/figures/lifecycle-deprecated.svg
e1c8d33150e179ed17231c575895092b *man/figures/lifecycle-experimental.svg
383d1a195cfb97ae7af9a37a877b88eb *man/figures/lifecycle-stable.svg
6920593141a53e9e05a9d7c6fd393650 *man/figures/lifecycle-superseded.svg
64c07e1594a5ea5561f1e9df46f08a34 *man/fit_growth.Rd
49bf70c5412fb76e7387696ff1e2ef16 *man/fit_tktd.Rd
780e4899a808253b2ebeb397e4beb683 *man/focusd1.Rd
e13fb9b6a0ae4e5849b4141b761d3c8a *man/fx.Rd
b99c5901137003604daff34cac32abed *man/get_model.Rd
2529dfb3d76e431e44b13ae66e0187fa *man/get_param.Rd
03bfbe8e75d95c763db8536016fdfe38 *man/get_tag.Rd
cd0be316ed428d249128ea6b3c24c0a9 *man/get_times.Rd
1a011b0129a922b78069f077fe514eaf *man/import_morse.Rd
016eda562c23a9e27ad7fcdf4fb92a97 *man/import_swash.Rd
14166ae13afad1908a1af255d245f62b *man/import_toxswa.Rd
b69c10ef2a478331c4b7fd26fea1dd4b *man/is_LemnaThreshold.Rd
9efaf76d9b2c6a55b1ba469ff9099395 *man/is_deb.Rd
521655861ad3baf04d8cc883d21235fb *man/is_guts.Rd
3b051b5f6a27d96c214fed3fc40d72c5 *man/is_lemna.Rd
38be3603c9cdf9af2c527951907b74b5 *man/is_scenario.Rd
65381c2decccaf2b27e9b6d06679f7c8 *man/lik_profile.Rd
50ff18635b6ceedf067293a54021431c *man/log_enable.Rd
696a9c011f897384d1ef532bc782a3ad *man/log_envir.Rd
300b0bdb4021243d3cb8657e05104ef4 *man/log_lik.Rd
843ff969ce61aaab67eac8fea95d970e *man/log_msg.Rd
da08b4fe3a7205216e92f12dff77304c *man/log_scenarios.Rd
28f44e290f34a417e328ba5c429385a9 *man/metsulfuron.Rd
dbf50242b66c353928396418c91ada11 *man/minnow_it.Rd
ac5871163a8b05f731f5bb5ff38e4c85 *man/minnow_sd.Rd
9c277bded7975a43b78976f11128e95a *man/no_exposure.Rd
db5053589f12b42df36c04754fd7ece3 *man/num_info.Rd
6e2908a22f2a894f9c6388ecbbf3ba64 *man/parameter_set.Rd
a15815bf70a446c1e827c59b43348c31 *man/pipe.Rd
0ba11e7bc375101f0f250d880909ae26 *man/pll_debug.Rd
2c6502eb590469c671b5de23b765889a *man/plot.Rd
6ec1c70d771f5e59c15a547cf9888efb *man/plot.param_space.Rd
77fcb6dbe1c787ed52699abcb2da8241 *man/plot_epx.Rd
491af9442de2725e2e4f9cb2b9cbe395 *man/plot_ppc.Rd
85345e94ed48137b250518e35d41a3c3 *man/plot_ppc_combi.Rd
e1423d9f474537579ae168d1c36cbd0a *man/plot_scenario.Rd
26193e779be19756b2ba2448d6836830 *man/plot_sd.Rd
2dd342002be1bd3020250ef4696692c2 *man/pull_metadata.Rd
3bb7bd2cfb1467f8ff31575639bc6b97 *man/ringtest_c.Rd
6f6adbce6febc3acda163e20e75e952a *man/ringtest_it.Rd
02711ea522f129bae6e9d67ac9d857bb *man/ringtest_sd.Rd
0d15874e5a219dc8c713803a33d5d184 *man/rsubcapitata.Rd
4154281e3b8cfd9c203061fe010da0e2 *man/schmitt2013.Rd
6ac188b749eb00edad66e177165e1fe9 *man/sequence.Rd
08461490242c7851bcc8be205d03c40d *man/sequence.extract.Rd
d5c347f9badb45945f925f6429e8dabd *man/set_bounds.Rd
8a7f25767440785132bf9d9481215896 *man/set_endpoints.Rd
a6d8849724c9ac5980e1cf714583fe10 *man/set_exposure.Rd
957a4f281c44d0e67e87a88e5ffdeee6 *man/set_forcings.Rd
42b605434941e6a4f410f4935301b720 *man/set_init.Rd
cf5df719ab18d788ca1c3dba66412a5f *man/set_mode_of_action.Rd
e70b1ab3dfc433fdb4c894ecda115f14 *man/set_noexposure.Rd
741c86832188a319c72487cee4afc356 *man/set_param.Rd
8bca53f0a8bc2e281e0e95a4671b57e6 *man/set_tag.Rd
a2123892ca602968525077244c4a3975 *man/set_times.Rd
64fe5252fcb418526c54571edf51fb62 *man/set_transfer.Rd
ee6df4529222264a500f029477f66b22 *man/set_window.Rd
e8a224c1cc89ae66ce2f982934c5fa75 *man/simulate.Rd
317ac0d0fb61939ab95e48709a7e3537 *man/simulate_batch.Rd
d19de4ae8b9e6ade401610de2c0e6cac *man/solver.Rd
f8ae6ff94a8217acda7071cde3fc3167 *man/survival.Rd
07195e07bfd0033b123adc44d1667eaa *man/td2cs.Rd
2dd436e1ebc9acaff96c29f04efb5865 *man/tox_data.Rd
655d6c83e3db8633429156c2381bdbfd *src/algae_simple.c
e82e36220eb42bd6afdd945f5bd961ae *src/algae_tktd.c
1cbd89b2470b57620df7f05a34cbd838 *src/algae_weber.c
b0e86e63eabc62969154e2ed5401c2d2 *src/cvasi_init.c
cc4343032e56952ee892eff3832a6924 *src/deb_abj.c
7c6c8e175d8af530ddd33e80cf3a1e36 *src/debtox.c
f8b43b5dca3bbb0761994745420bdf8f *src/guts_it.c
9cf838a15dd751bec11a947fe87e5332 *src/guts_red_it.c
2d4ff0c27e2ca151fe1edee2ef9b7e9d *src/guts_red_sd.c
3bd0ef7b08f1f940eb0138e4e8ab082f *src/guts_sd.c
cc9d42205864a097d8bd204a14f7580c *src/lemna_schmitt.c
366a132dd2027b8bf7c99babec0e4775 *src/lemna_setac.c
0f4746ccbbcfcf692d63a0fab6cfc611 *src/magma.c
ad3dd6ab3e11cd1f69f00c26d4dc391a *tests/data/DEBtox_Daphnia/Data_exposure_profile_Dmagna_TFS_Cst.txt
a485898abfd951d1992ad42c19944edc *tests/data/DEBtox_Daphnia/Data_exposure_profile_Dmagna_TFS_Var1.txt
cba8cf3a3bfb18fd1283afde27c9c449 *tests/data/DEBtox_Daphnia/Data_exposure_profile_Dmagna_TFS_Var2.txt
288c385c4642806c027b5efc6b3b0fd4 *tests/data/DEBtox_Daphnia/README.txt
900d5438e3cae01940d2f1880f3f53fe *tests/data/DEBtox_Daphnia/test_damage.txt
5bed4a0aa9c8aa4586d7608fc50cfb62 *tests/data/DEBtox_Daphnia/test_length.txt
140b0f60af4aa9e6391ef6b7d82cd1ae *tests/data/DEBtox_Daphnia/test_repro.txt
4a248639b41d8bff5f9f1d2b1fead78a *tests/data/DEBtox_Daphnia/test_surv.txt
25831d52592699d6240b00957c93ef30 *tests/data/EFSA_propiconazole/import.R
067913eb099ca82fe4c4f433ad8c78d6 *tests/data/EFSA_propiconazole/readme.txt
0f9ab8a5d310bea40ba47205a504b244 *tests/data/TOXSWA/testonil.out
e9aed161712f1ed0c2d58e0ea8e526c5 *tests/data/morse/data-morse.R
a11b77fe4216e16ed07b4e6daf962cb7 *tests/data/morse/fit_it.rds
0a2bd40203df1427e7c2443547ae7f21 *tests/data/morse/fit_sd.rdata
f43d53ce320d2eb4e96ce71964143a48 *tests/data/morse/fit_sd.rds
ec90a9c31461ee8b43e0e7f5f4f2379c *tests/testthat.R
eca97be106c30da3929a3f5d5654b7c5 *tests/testthat/Rplots.pdf
8b0568464cd7cfeffb54bb9650d976cc *tests/testthat/_snaps/verify-guts.md
dbe51927024e0b2902d49c46541b4d68 *tests/testthat/_snaps/verify-guts_red.md
769ff680b742932710db3576f80c6348 *tests/testthat/dummy.R
27d96daacbbe8960a5abf1b2a98b1872 *tests/testthat/init-simulate_Daphnia.R
657898e02122a6258c568f55be6df352 *tests/testthat/morse_guts-red.R
b5211ceeabe82886986b033dc3177497 *tests/testthat/test-batch.R
289cfb6d2702f023a9febed887126c28 *tests/testthat/test-cache.R
d74e2f72fdaf240b89adee9cb5651ce5 *tests/testthat/test-calibrate.R
c12d43e639b50859deca3d3a39aa9eab *tests/testthat/test-caliset.R
4e3109a33a83ced8a41b3f3ed52d39a1 *tests/testthat/test-clip.R
4d22c9f4b4067ef08673928475827a13 *tests/testthat/test-effect.R
42c377ba3334accd61412520cbe30cee *tests/testthat/test-epx.R
fbd5b3b784fc60d8d6ab2cfb5df97ef6 *tests/testthat/test-eval_cs.R
6506c370fdf66596a91fbb7fab158213 *tests/testthat/test-explore_space.R
6c17bd82fe78728832e8111edc8e6650 *tests/testthat/test-fit_growth.R
04ea9901fc6b858a537cc7b050af103b *tests/testthat/test-fit_tktd.R
e7b15c168ded07135b00111348196ead *tests/testthat/test-fx.R
904b0770bd0b31b700e1fbd9a5e86fb0 *tests/testthat/test-get.R
52167ebecb57e9ef54b97edbf7954a1c *tests/testthat/test-get_bounds.R
6ad24726d818fc733a7b022df6ad6b35 *tests/testthat/test-get_param.R
40d5ebef695ffa471a9e9dc28867d023 *tests/testthat/test-get_tag.R
598779964b2ef6bd04833d151ade879b *tests/testthat/test-get_times.R
03253f3da52c7bfd5ede0d1a9f22c37a *tests/testthat/test-has.R
aa91f8e5b57e65b71d37ec5b60fbd613 *tests/testthat/test-import_morse.R
1d0830319d1ec3c5639861b2f4c0169c *tests/testthat/test-import_toxswa.R
0c0705e255e6ae7a32b3da66c05475f6 *tests/testthat/test-is.R
6ff30a6149727c989ec1e66409ef4f07 *tests/testthat/test-lik_profile.R
a679c626f3021ff01053097b6a11ba45 *tests/testthat/test-log_lik.R
96d1573cf39bd9d885f5e1885ce00424 *tests/testthat/test-model-algae.R
7b271be83768b9c65851f00198dcd141 *tests/testthat/test-model-deb_abj.R
9c6cf6929111dede011fd56005ebcf6f *tests/testthat/test-model-debtox.R
e9effec8729f65a2cf1f168f35d0e909 *tests/testthat/test-model-guts.R
8e75044ab011a0b324b10dae39d7cb69 *tests/testthat/test-model-guts_red.R
46f005d79ab71afabcedb4d3abcae3fd *tests/testthat/test-model-lemna_schmitt.R
bc662a48dd65e9d5375814780bb805cc *tests/testthat/test-model-lemna_setac.R
c4212ff859f7058c6b8f73e4512adefd *tests/testthat/test-model-magma.R
95d95d73ef3bda3987f0ffe634c2fb98 *tests/testthat/test-parameter_set.R
05da111fb8b8219f3e72c9705a328ab9 *tests/testthat/test-plot.R
5cf23e5e93ff768e8c5a15cb527f9580 *tests/testthat/test-plotting.R
e6ab4c774116fccef9a0793f74d2ca36 *tests/testthat/test-ringtest_dataA_IT.R
257d575ea3611a936e8c57ff2d266f6f *tests/testthat/test-ringtest_dataA_SD.R
b80b2d3d6ca2a048aa0dc67947a9dcff *tests/testthat/test-sequence.R
206084d37ac937d0fb5976d4138d23d4 *tests/testthat/test-set.R
507a13ec8eba73b1ac8e0929ce2caf78 *tests/testthat/test-set_bounds.R
93a21a5b435b9cda865d8a995f80229a *tests/testthat/test-set_exposure.R
80c5e9353e4f0fde0bdb1aca01080cd0 *tests/testthat/test-set_init.R
883672b8052558de3faf019b91a7427b *tests/testthat/test-set_param.R
33293fc89becc47b1e34dedea68ad98c *tests/testthat/test-set_times.R
59d00088fdc67ed0288116c9efa0eb52 *tests/testthat/test-set_transfer.R
5dcc8f1756bc9c290183f052457de8a9 *tests/testthat/test-show.R
9f54d7a4249ca79693bb676c199785c8 *tests/testthat/test-simulate.R
fb18de034bb5f4bdfefb217d2bf2c659 *tests/testthat/test-simulate_batch.R
b3c4df0abd8dad75e20faa4417723ab3 *tests/testthat/test-simulate_batch2.R
d059b1fb745e8879d24e05155d165c14 *tests/testthat/test-simulate_scenario.R
9e960888cfb9eb2172c7ed020d29d001 *tests/testthat/test-simulate_sequence.R
3a1e7ab1490cc61f52bd45c88bcda686 *tests/testthat/test-simulate_transfer.R
d778cb805d00b1511f8b3ebe2dd24617 *tests/testthat/test-solver.R
94c8883c94fe4ad14539ad25fb861eca *tests/testthat/test-survival.R
17fbdb55338243e55d8be1a1daf73b80 *tests/testthat/test-tox_data.R
6530012abdce3169c043f24ca50ee26b *tests/testthat/test-verify-guts.R
d60cb107fe3e66e31263ed00fc79b48a *tests/testthat/test-verify-guts_red.R
86e6a364596e52df2d798adede16922f *vignettes/cvasi-1-manual.Rmd
331d941afea7de6a00c0ccfc63d6a663 *vignettes/cvasi-2-howto.Rmd
