@InCollection{Schubert2019,
  author    = {Erich Schubert and Peter J. Rousseeuw},
  booktitle = {Similarity Search and Applications},
  publisher = {Springer International Publishing},
  title     = {Faster k-Medoids Clustering: Improving the {PAM}, {CLARA}, and {CLARANS} Algorithms},
  year      = {2019},
  pages     = {171--187},
  doi       = {10.1007/978-3-030-32047-8_16},
}

@Manual{R-DuoClustering2018,
    title = {DuoClustering2018: Data, Clustering Results and Visualization Functions From Duò et
al (2018)},
    author = {Angelo Duò and Charlotte Soneson},
    year = {2021},
    note = {R package version 1.10.0},
}
  
@Article{R-Seurat,
    author = {Yuhan Hao and Stephanie Hao and Erica Andersen-Nissen and William M. Mauck III and Shiwei Zheng and Andrew Butler and Maddie J. Lee and Aaron J. Wilk and Charlotte Darby and Michael Zagar and Paul Hoffman and Marlon Stoeckius and Efthymia Papalexi and Eleni P. Mimitou and Jaison Jain and Avi Srivastava and Tim Stuart and Lamar B. Fleming and Bertrand Yeung and Angela J. Rogers and Juliana M. McElrath and Catherine A. Blish and Raphael Gottardo and Peter Smibert and Rahul Satija},
    title = {Integrated analysis of multimodal single-cell data},
    journal = {Cell},
    year = {2021},
    doi = {10.1016/j.cell.2021.04.048},
    url = {https://doi.org/10.1016/j.cell.2021.04.048},
}
  
@Article{R-splatter,
    author = {Luke Zappia and Belinda Phipson and Alicia Oshlack},
    title = {Splatter: simulation of single-cell RNA sequencing data},
    journal = {Genome Biology},
    year = {2017},
    url = {http://dx.doi.org/10.1186/s13059-017-1305-0},
    doi = {10.1186/s13059-017-1305-0},
}

@Article{R-Rcpp,
    title = {{Rcpp}: Seamless {R} and {C++} Integration},
    author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
    journal = {Journal of Statistical Software},
    year = {2011},
    volume = {40},
    number = {8},
    pages = {1--18},
    doi = {10.18637/jss.v040.i08},
}

@Misc{R-float,
    title = {{float}: 32-Bit Floats},
    author = {Drew Schmidt},
    year = {2022},
    note = {{R} package version 0.3-0},
    url = {https://cran.r-project.org/package=float},
}

@Manual{R-jmatrix,
  title  = {jmatrix: Read from/write to disk matrices with any data type in a binary format},
  author = {Domingo, Juan},
  note   = {R package version 1.5},
  year   = {2023},
}

@Manual{R-parallelpam,
  title  = {parallelpam: Applies the Partitioning-around-medoids (PAM) clustering algorithm to big sets of data using parallel implementation, if several cores are available},
  author = {Domingo, Juan},
  note   = {R package version 1.4},
  year   = {2023},
}

@Manual{R-scellpam,
  title  = {Applying Partitioning Around Medoids to Single Cell Data with High Number of Cells},
  author = {Domingo, Juan},
  note   = {R package version 1.4.6},
  year   = {2023},
}

@Article{Domingo2023,
author="Domingo, Juan and
        Leon, Teresa and
        Dura, Esther",
title="Scellpam: an {R} package/{C}++ library to perform parallel partitioning around medoids on scRNAseq data sets",
journal="BMC Bioinformatics",
year="2023",
month="Sep",
day="14",
volume="24",
number="1",
pages="342",
issn="1471-2105",
doi="10.1186/s12859-023-05471-1",
url="https://doi.org/10.1186/s12859-023-05471-1"
}

@Manual{R-cluster,
    title = {cluster: Cluster Analysis Basics and Extensions},
    author = {Martin Maechler and Peter Rousseeuw and Anja Struyf and Mia
    Hubert and Kurt Hornik},
    year = {2022},
    url = {https://CRAN.R-project.org/package=cluster},
    note = {R package version 2.1.4 --- For new features, see the 'Changelog' file (in the package source)},
}

@Manual{R-ClusterR,
    title = {{ClusterR}: Gaussian Mixture Models, K-Means,
      Mini-Batch-Kmeans, K-Medoids and Affinity Propagation
      Clustering},
    author = {Lampros Mouselimis},
    year = {2023},
    note = {R package version 1.3.0},
    url = {https://CRAN.R-project.org/package=ClusterR},
  }
  
@Manual{R-Matrix,
    title = {Matrix: Sparse and Dense Matrix Classes and Methods},
    author = {Douglas Bates and Martin Maechler and Mikael Jagan},
    year = {2022},
    note = {R package version 1.5-3},
    url = {https://CRAN.R-project.org/package=Matrix},
  }
 
@Comment{jabref-meta: databaseType:bibtex;}
