CRAN Package Check Results for Package mlr3pipelines

Last updated on 2025-12-06 09:48:43 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.10.0 37.69 765.78 803.47 OK
r-devel-linux-x86_64-debian-gcc 0.10.0 23.21 505.79 529.00 OK
r-devel-linux-x86_64-fedora-clang 0.10.0 198.00 1148.48 1346.48 ERROR
r-devel-linux-x86_64-fedora-gcc 0.10.0 176.00 1136.63 1312.63 OK
r-devel-windows-x86_64 0.10.0 37.00 557.00 594.00 OK
r-patched-linux-x86_64 0.10.0 52.79 696.73 749.52 OK
r-release-linux-x86_64 0.10.0 33.92 705.86 739.78 ERROR
r-release-macos-arm64 0.10.0 OK
r-release-macos-x86_64 0.10.0 37.00 531.00 568.00 OK
r-release-windows-x86_64 0.10.0 37.00 525.00 562.00 OK
r-oldrel-macos-arm64 0.10.0 10.00 117.00 127.00 ERROR
r-oldrel-macos-x86_64 0.10.0 67.00 515.00 582.00 ERROR
r-oldrel-windows-x86_64 0.10.0 49.00 639.00 688.00 ERROR

Additional issues

ATLAS noLD

Check Details

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [13m/14m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. Saving _problems/test_filter_ensemble-294.R Saving _problems/test_filter_ensemble-307.R > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr > test_mlr_graphs_robustify.R: ecated"). > test_multiplicities.R: > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] > test_pipeop_blsmote.R: "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] > test_pipeop_blsmote.R: "Borderline-SMOTE done" > test_pipeop_isomap.R: 2025-12-03 20:30:52.178844: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:30:52.188225: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:52.241396: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:52.3382: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:30:52.63962: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:30:52.640393: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:52.673667: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:52.73436: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:30:52.852686: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:30:52.853773: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:52.93476: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:53.094272: embedding > test_pipeop_isomap.R: 2025-12-03 20:30:53.09641: DONE > test_pipeop_isomap.R: 2025-12-03 20:30:53.223601: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:30:53.232458: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:53.319694: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:53.494901: embedding > test_pipeop_isomap.R: 2025-12-03 20:30:53.503531: DONE > test_pipeop_isomap.R: 2025-12-03 20:30:53.847005: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:30:53.847743: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:53.937428: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:54.430068: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:30:54.57678: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:30:54.57794: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:54.807348: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:56.204557: embedding > test_pipeop_isomap.R: 2025-12-03 20:30:56.226136: DONE > test_pipeop_isomap.R: 2025-12-03 20:30:57.125875: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:30:57.126669: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:57.162276: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:57.230187: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:30:57.375948: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:30:57.376974: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:57.452791: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:57.696058: embedding > test_pipeop_isomap.R: 2025-12-03 20:30:57.709529: DONE > test_pipeop_isomap.R: 2025-12-03 20:30:58.093506: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:30:58.094303: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:58.113741: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:58.145293: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:30:58.236962: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:30:58.240657: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:58.34573: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:58.412291: embedding > test_pipeop_isomap.R: 2025-12-03 20:30:58.416551: DONE > test_pipeop_isomap.R: 2025-12-03 20:30:58.74213: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:30:58.742924: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:58.770496: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:58.850435: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:30:59.035268: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:30:59.038904: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:30:59.095923: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:30:59.262424: embedding > test_pipeop_isomap.R: 2025-12-03 20:30:59.271001: DONE > test_pipeop_isomap.R: 2025-12-03 20:31:00.081115: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:31:00.087914: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:31:00.112966: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:31:00.195289: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:31:00.43192: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:31:00.433025: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:31:00.511669: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:31:00.681612: embedding > test_pipeop_isomap.R: 2025-12-03 20:31:00.688634: DONE > test_pipeop_isomap.R: 2025-12-03 20:31:01.035443: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:31:01.036204: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:31:01.06221: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:31:01.148698: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:31:01.372226: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-03 20:31:01.373302: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:31:01.446755: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:31:01.601827: embedding > test_pipeop_isomap.R: 2025-12-03 20:31:01.609045: DONE > test_pipeop_isomap.R: 2025-12-03 20:31:01.889582: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:31:01.890339: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:31:01.978638: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:31:02.013733: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:31:02.193271: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:31:02.19405: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:31:02.224538: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:31:02.290909: Classical Scaling > test_pipeop_isomap.R: 2025-12-03 20:31:02.374123: Isomap START > test_pipeop_isomap.R: 2025-12-03 20:31:02.381299: constructing knn graph > test_pipeop_isomap.R: 2025-12-03 20:31:02.410511: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-03 20:31:02.470767: Classical Scaling > test_pipeop_nmf.R: [PipeOpNMFstate] > test_pipeop_nmf.R: [PipeOpNMFstate] > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ] ══ Skipped tests (100) ═════════════════════════════════════════════════════════ • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE. Differences: `actual` is a character vector ('Mean relative difference: 0.9110593') `expected` is a logical vector (TRUE) Backtrace: ▆ 1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3 2. └─testthat::expect_true(...) [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [427s/210s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. Saving _problems/test_filter_ensemble-294.R Saving _problems/test_filter_ensemble-307.R > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr > test_mlr_graphs_robustify.R: ecated"). > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_isomap.R: 2025-11-29 16:11:02.279489: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:02.28023: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:02.289827: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:02.309264: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:02.367778: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:02.368258: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:02.377531: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:02.397061: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:02.458491: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:02.459182: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:02.47361: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:02.517176: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:02.518342: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:02.541654: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:02.542128: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:02.555725: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:02.600298: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:02.601701: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:02.681252: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:02.68175: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:02.699243: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:02.803264: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:02.836262: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:02.836912: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:02.870789: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.07982: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:03.097722: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:03.239251: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:03.239693: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:03.24714: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.266608: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:03.2969: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:03.297562: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:03.31355: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.354947: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:03.356141: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:03.489363: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:03.489792: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:03.498733: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.517413: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:03.562348: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:03.564548: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:03.579281: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.621957: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:03.623067: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:03.71452: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:03.714961: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:03.724657: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.74558: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:03.787524: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:03.788173: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:03.801627: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.848686: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:03.849905: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:03.922364: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:03.92283: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:03.930304: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:03.948301: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:03.995377: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:03.996032: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:04.010417: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:04.053577: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:04.054799: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:04.130713: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:04.131173: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:04.152408: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:04.171641: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:04.218403: L-Isomap embed START > test_pipeop_isomap.R: 2025-11-29 16:11:04.219074: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:04.235689: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:04.279585: embedding > test_pipeop_isomap.R: 2025-11-29 16:11:04.280857: DONE > test_pipeop_isomap.R: 2025-11-29 16:11:04.365453: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:04.365898: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:04.373423: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:04.392494: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:04.471998: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:04.472474: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:04.479881: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:04.498398: Classical Scaling > test_pipeop_isomap.R: 2025-11-29 16:11:04.520849: Isomap START > test_pipeop_isomap.R: 2025-11-29 16:11:04.521299: constructing knn graph > test_pipeop_isomap.R: 2025-11-29 16:11:04.528664: calculating geodesic distances > test_pipeop_isomap.R: 2025-11-29 16:11:04.547723: Classical Scaling > test_pipeop_nmf.R: [PipeOpNMFstate] > test_pipeop_nmf.R: [PipeOpNMFstate] > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead. > test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated"). > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ] ══ Skipped tests (100) ═════════════════════════════════════════════════════════ • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE. Differences: `actual` is a character vector ('Mean absolute difference: Inf') `expected` is a logical vector (TRUE) Backtrace: ▆ 1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3 2. └─testthat::expect_true(...) [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 0.10.0
Check: examples
Result: ERROR Running examples in ‘mlr3pipelines-Ex.R’ failed The error most likely occurred in: > ### Name: mlr_pipeops_nmf > ### Title: Non-negative Matrix Factorization > ### Aliases: mlr_pipeops_nmf PipeOpNMF > > ### ** Examples > > ## Don't show: > if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf + ## End(Don't show) + ## Don't show: + # NMF attaches these packages to search path on load, #929 + lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE) + ## End(Don't show) + library("mlr3") + + task = tsk("iris") + pop = po("nmf") + + task$data() + pop$train(list(task))[[1]]$data() + + pop$state + ## Don't show: + # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112 + # Necessary as detaching packages does not remove registered S3 methods + suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE)) + ## End(Don't show) + ## Don't show: + }) # examplesIf > lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), + detach, character.only = TRUE) Error in FUN(X[[i]], ...) : invalid 'name' argument Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [102s/50s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2025-12-06 18:05:43.763188: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:43.763441: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:43.766422: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:43.772617: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:43.78427: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:43.784405: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:43.786885: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:43.792973: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:43.799304: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:43.799466: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:43.803824: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:43.818617: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:43.818952: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:43.824036: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:43.824167: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:43.828174: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:43.843012: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:43.843409: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:43.861134: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:43.861251: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:43.865569: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:43.89864: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:43.906694: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:43.906887: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:43.921861: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:43.999585: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:44.000754: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:44.035609: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.035747: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.038035: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.044225: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:44.050513: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:44.05069: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.0555: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.070796: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:44.07121: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:44.101101: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.101241: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.103711: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.110034: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:44.120593: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:44.120787: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.130743: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.145964: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:44.146329: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:44.164376: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.164517: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.166932: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.173159: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:44.183941: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:44.184109: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.188557: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.203381: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:44.203775: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:44.22043: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.220547: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.22277: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.22898: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:44.239247: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:44.239413: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.244019: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.258945: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:44.259299: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:44.275812: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.275942: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.28357: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.290164: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:44.300622: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-06 18:05:44.300797: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.305437: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.320281: embedding > test_pipeop_isomap.R: 2025-12-06 18:05:44.320671: DONE > test_pipeop_isomap.R: 2025-12-06 18:05:44.339545: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.339674: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.342252: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.348409: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:44.365243: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.365367: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.367846: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.374057: Classical Scaling > test_pipeop_isomap.R: 2025-12-06 18:05:44.379319: Isomap START > test_pipeop_isomap.R: 2025-12-06 18:05:44.379427: constructing knn graph > test_pipeop_isomap.R: 2025-12-06 18:05:44.381925: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-06 18:05:44.388138: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [307s/271s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2025-12-05 23:40:10.963385: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:10.963974: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:10.975821: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:10.996393: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:11.080562: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:11.08086: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:11.088999: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:11.113295: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:11.137236: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:11.137674: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:11.158954: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:11.217437: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:11.218508: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:11.239604: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:11.2399: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:11.2587: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:11.316931: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:11.318031: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:11.397539: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:11.398501: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:11.415735: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:11.550655: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:11.578077: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:11.578512: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:11.638243: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:11.907293: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:11.911289: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:12.048494: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:12.048827: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:12.056119: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:12.080883: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:12.102051: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:12.102535: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:12.126641: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:12.183553: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:12.185876: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:12.336633: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:12.336954: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:12.347006: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:12.372505: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:12.418313: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:12.418743: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:12.440171: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:12.491554: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:12.492797: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:12.562295: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:12.562613: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:12.571091: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:12.619986: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:12.692167: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:12.69369: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:12.770195: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:12.859268: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:12.860617: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:12.939765: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:12.940056: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:12.954766: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:12.984007: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:13.033425: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:13.033882: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:13.053284: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:13.118237: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:13.119429: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:13.208168: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:13.208466: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:13.222352: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:13.250453: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:13.301474: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 23:40:13.301938: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:13.809754: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:13.871542: embedding > test_pipeop_isomap.R: 2025-12-05 23:40:13.872602: DONE > test_pipeop_isomap.R: 2025-12-05 23:40:14.043824: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:14.044126: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:14.050645: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:14.067638: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:14.142634: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:14.142919: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:14.149409: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:14.166284: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 23:40:14.196162: Isomap START > test_pipeop_isomap.R: 2025-12-05 23:40:14.196455: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 23:40:14.211391: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 23:40:14.228282: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead. > test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated"). > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64

Version: 0.10.0
Check: tests
Result: ERROR Running 'testthat.R' [276s] Running the tests in 'tests/testthat.R' failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. Saving _problems/test_filter_ensemble-294.R Saving _problems/test_filter_ensemble-307.R > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2025-12-05 09:10:17.269554: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:17.270535: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:17.285775: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:17.310338: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:17.379008: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:17.37962: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:17.390467: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:17.407973: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:17.451409: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:17.452468: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:17.471692: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:17.509631: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:17.511396: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:17.552369: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:17.553087: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:17.588155: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:17.635238: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:17.63674: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:17.768119: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:17.768798: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:17.789241: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:17.89746: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:17.945532: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:17.946664: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:18.006027: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:18.245565: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:18.251105: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:18.476012: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:18.476689: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:18.487999: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:18.509757: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:18.6432: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:18.64429: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:18.666182: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:18.714406: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:18.716113: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:18.915012: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:18.915526: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:18.923468: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:18.943846: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:19.005978: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:19.006642: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:19.029213: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:19.08091: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:19.082849: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:19.211741: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:19.212383: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:19.222509: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:19.244268: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:19.314327: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:19.315242: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:19.333067: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:19.372758: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:19.3745: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:19.48358: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:19.484277: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:19.496862: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:19.519529: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:19.591323: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:19.592315: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:19.626329: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:19.676073: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:19.67789: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:19.769006: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:19.769498: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:19.780428: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:19.802959: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:19.87081: L-Isomap embed START > test_pipeop_isomap.R: 2025-12-05 09:10:19.871714: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:19.891065: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:19.941783: embedding > test_pipeop_isomap.R: 2025-12-05 09:10:19.943964: DONE > test_pipeop_isomap.R: 2025-12-05 09:10:20.667826: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:20.668456: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:20.679931: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:20.697664: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:20.822275: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:20.823095: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:20.835371: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:20.858724: Classical Scaling > test_pipeop_isomap.R: 2025-12-05 09:10:20.898576: Isomap START > test_pipeop_isomap.R: 2025-12-05 09:10:20.89935: constructing knn graph > test_pipeop_isomap.R: 2025-12-05 09:10:20.911428: calculating geodesic distances > test_pipeop_isomap.R: 2025-12-05 09:10:20.934781: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE. Differences: `actual` is a character vector ('Mean relative difference: 0.7240711') `expected` is a logical vector (TRUE) Backtrace: ▆ 1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3 2. └─testthat::expect_true(...) ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64