GeneScoreR: Gene Scoring from Count Tables

Provides methods for automatic calculation of gene scores from gene count tables, including a Z-score method that requires a table of samples being scored and a count table with control samples; a geometric mean method that does not rely on control samples; and a principal component-based method that summarizes gene expression using user-selected principal components. The Z-score and geometric mean approaches are described in Kim et al. (2018) <doi:10.1089/jir.2017.0127>.

Version: 0.2.0
Imports: stats
Published: 2025-11-26
DOI: 10.32614/CRAN.package.GeneScoreR
Author: Aris Syntakas [aut, cre]
Maintainer: Aris Syntakas <sejjsyn at ucl.ac.uk>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: NEWS
CRAN checks: GeneScoreR results

Documentation:

Reference manual: GeneScoreR.html , GeneScoreR.pdf

Downloads:

Package source: GeneScoreR_0.2.0.tar.gz
Windows binaries: r-devel: GeneScoreR_0.1.1.zip, r-release: GeneScoreR_0.1.1.zip, r-oldrel: GeneScoreR_0.1.1.zip
macOS binaries: r-release (arm64): GeneScoreR_0.2.0.tgz, r-oldrel (arm64): GeneScoreR_0.2.0.tgz, r-release (x86_64): GeneScoreR_0.2.0.tgz, r-oldrel (x86_64): GeneScoreR_0.2.0.tgz
Old sources: GeneScoreR archive

Linking:

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