TY - CONF TI - Keynote II T2 - 2010 IEEE Workshop on Principles of Advanced and Distributed Simulation SP - 1 EP - 2 AU - J. Lara PY - 2010 KW - biology computing KW - diseases KW - epidemics KW - health care KW - molecular biophysics KW - clinical health KW - genetic markers KW - hepatitis C virus infection KW - integrative molecular epidemiology KW - phylogenetic inference KW - public health KW - viral agent KW - viral genomes DO - 10.1109/PADS.2010.5471649 JO - 2010 IEEE Workshop on Principles of Advanced and Distributed Simulation IS - SN - 1087-4097 VO - VL - JA - 2010 IEEE Workshop on Principles of Advanced and Distributed Simulation Y1 - 17-19 May 2010 ER - TY - CONF TI - Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry T2 - 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) SP - 79 EP - 86 AU - Z. Dimitrova AU - D. S. Campo AU - S. Ramachandran AU - G. Vaughan AU - L. Ganova-Raeva AU - Y. Lin AU - J. C. Forbi AU - G. Xia AU - P. Skums AU - B. Pearlman AU - Y. Khudyakov PY - 2011 KW - biomedical measurement KW - diseases KW - genetics KW - mass spectroscopy KW - medical computing KW - microorganisms KW - molecular configurations KW - amplicon analysis: KW - base-specific cleavage reaction KW - clonal sequencing KW - end-point limiting-dilution KW - hepatitis C virus hypervariable region 1 KW - hepatitis C virus inter-host diversity KW - hepatitis C virus intra-host diversity KW - intra-host viral population KW - mass spectrometry KW - molecular application epidemiology KW - next generation sequencing KW - real-time PCR KW - viral strain KW - viral variant KW - Fingerprint recognition KW - Genetics KW - Immune system KW - Protocols KW - RNA KW - Strain KW - USA Councils DO - 10.1109/BIBMW.2011.6112358 JO - 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) IS - SN - VO - VL - JA - 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Y1 - 12-15 Nov. 2011 ER - TY - CONF TI - Network of coordinated substitutions in the Hepatitis B virus polymerase T2 - 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) SP - 64 EP - 71 AU - D. S. Campo AU - Z. Dimitrova AU - J. Lara AU - M. Purdy AU - H. Thai AU - S. Ramachandran AU - L. Ganova-Raeva AU - X. Zhai AU - J. C. Forbi AU - C. G. Teo AU - Y. Khudyakov PY - 2011 KW - belief networks KW - cellular biophysics KW - diseases KW - enzymes KW - genomics KW - hydrophobicity KW - medical computing KW - molecular biophysics KW - molecular configurations KW - Bayesian network KW - HBV genome KW - HBV polymerase sequence KW - amino acid site KW - cellular signal transduction KW - codon selection KW - coordinated substitution network KW - drug resistance KW - epistatic network KW - hepatitis B virus polymerase KW - hydrophobicity KW - reverse-transcriptase domain KW - spacer domain KW - terminal protein KW - vaccine escape KW - viral virulence KW - Bioinformatics KW - Correlation KW - Genomics KW - Hidden Markov models KW - Maximum likelihood estimation KW - Polymers KW - Proteins DO - 10.1109/BIBMW.2011.6112356 JO - 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) IS - SN - VO - VL - JA - 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Y1 - 12-15 Nov. 2011 ER -