Lizard_Size_Data        Skink size data - Lampropholis delicata
Tree_Size_Data          Garcinia recondita - Barro Colorado Island data
Tree_Size_Ests          Garcinia recondita model estimates - Barro
                        Colorado Island data
Trout_Size_Data         SUSTAIN Salmo trutta data
hmde-package            The 'hmde' package.
hmde_affine_de          Differential equation for affine growth single
                        individual model
hmde_assign_data        Assign data to template for chosen model
hmde_canham_de          Differential equation for Canham growth single
                        and multi- individual models
hmde_const_de           Differential equation for constant growth
                        single and multi- individual models
hmde_extract_Rhat       Calculate Rhat statistics for a hmde_fit object
hmde_extract_estimates
                        Extract samples and return measurement,
                        individual, and population-level estimates
hmde_model              Select data configuration template for hmde
                        supported model
hmde_model_des          Function to select DE given model name
hmde_model_names        Returns names of available models.
hmde_model_pars         Show parameter list for hmde supported model
hmde_plot_Rhat_hist     Plot histogram of R_hat values for hmde_fit
                        object.
hmde_plot_de_pieces     Plot pieces of chosen differential equation
                        model for each individual. Structured to take
                        the individual data tibble that is built by the
                        hmde_extract_estimates function using the
                        ind_par_name_mean estimates. Function piece
                        will go from the first fitted size to the last.
                        Accepted ggplot arguments will change the axis
                        labels, title, line colour, alpha
hmde_plot_obs_est_inds
                        Plot estimated and observed values over time
                        for a chosen number of individuals based on
                        posterior estimates. Structured to take in the
                        measurement_data tibble constructed by the
                        hmde_extract_estimates function.
hmde_run                Run chosen pre-built model in Stan
hmde_vb_de              Differential equation for von Bertalanffy
                        growth single and multi- individual models
plot.hmde_model_template
                        Plot function for hmde_model_template object
print.hmde_model_template
                        Print function for hmde_model_template object
summary.hmde_model_template
                        Summary function for hmde_model_template object
