BeeGUTS-package         'BeeGUTS' package; a package to perform GUTS
                        modelling for Bee experiments.
LCx                     Predict the Lethal Concentration method at
                        which x\% of organisms die for any specified
                        time-point for a 'beeSurvFit' object
LCx.beeSurvFit          Predict the Lethal Concentration at which x\%
                        of organisms die for any specified time-point
                        for a 'beeSurvFit' object
ShortTimeEffects        Perform comparison between LLD50 at 2 days and
                        at 10 days as for EFSA revised guideline (2023)
                        - Section 6.6
ShortTimeEffects.beeSurvFit
                        Calculate the presence of Time Reinforced
                        Toxicity for the compound from the calibrated
                        model 'beeSurvFit' object.
TRT                     Perform the extrapolation of the LDD50 to 27
                        days and check the presence of reinforced
                        toxicity as for EFSA revised guideline (2023) -
                        Annex G
TRT.beeSurvFit          Calculate the presence of Time Reinforced
                        Toxicity for the compound from the calibrated
                        model 'beeSurvFit' object.
betacyfluthrinChronic   Survival datasets for _Honey bees_ exposed to
                        constant concentration of Betacyfluthrin for 10
                        days.
concAC                  Recalculate the concentrations for the acute
                        contact tests for bees
concAO                  Recalculate concentration for the acute oral
                        tests for bees
concCst                 Recalculate the concentrations for the chronic
                        oral tests for bees from mg a.s./kg feed to
                        mug/bee
correlation_plot        Plotting of correlation plots for 'beeSurvFit'
                        objects
criteriaCheck           Computes PPC and NRMSE as defined in EFSA 2018
dataGUTS                Read and format the data for the BeeGUTS model
fitBeeGUTS              Fit a GUTS model for bees survival analysis
                        using Bayesian Inference (stan)
fitBetacyfluthrin_Chronic
                        Model calibration results datasets for _Honey
                        bees_ exposed to constant concentration of
                        Betacyfluthrin for 10 days.
plot.beeSurvData        Plotting method for 'beeSurvData' objects
plot.beeSurvFit         Plotting method for 'beeSurvFit' objects
plot.beeSurvPred        Plotting method for 'beeSurvPred' objects
plot.beeSurvValidation
                        Plotting method for 'beeSurvValidation' objects
plot.ppc                Plotting method for 'ppc' objects
ppc                     Generates an object to be used in posterior
                        predictive check for 'beeSurvFit',
                        'beeSurvPred'
ppc.beeSurvFit          Posterior predictive check method for
                        'beeSurvFit' objects
ppc.beeSurvValidation   Posterior predictive check method for
                        'beeSurvValidation' objects
predict.beeSurvFit      Predict method for 'beeSurvFit' objects
predict2                Predict method for 'beeSurvFit' objects
priorposterior_plot     Plotting of prior and posterior plots for
                        'beeSurvFit' objects
summary.LCx             Summary of 'LCx' objects
summary.beeSurvFit      Summary of 'beeSurvFit' objects
traceplot               Plotting method for traces and densities for
                        'beeSurvFit' objects
valBetacyfluthrinChronic
                        Pre-calculated validation results for _Honey
                        bees_ exposed to constant concentration of
                        Betacyfluthrin for 10 days. This is a toy
                        example that uses the calibrated model of the
                        object fitBetacyfluthrin_Chronic and the
                        dataset betacyfluthrinChronic
validate                Validation method for 'beeSurvFit ' objects
validate.beeSurvFit     Validate method for 'beeSurvFit' objects
