check_simresults        A function that checks if a call to simulation
                        function worked
dsairmmenu              The main menu for the DSAIRM package
generate_documentation
                        A helper function which processes and displays
                        the documentation part for each app
generate_fctcall        A helper function that produces a call to a
                        simulator function for specific settings
generate_ggplot         A helper function that takes simulation results
                        and produces ggplot plots
generate_modelsettings
                        A function to parse modelsettings for
                        simulation runs
generate_plotly         A helper function that takes simulation results
                        and produces plotly plots
generate_shinyinput     A helper function that takes a model and
                        generates shiny UI elements
generate_text           A helper function that takes result from the
                        simulators and produces text output
hayden96flu             Influenza virus load data
run_model               A function that runs an app for specific
                        settings and processes results for plot and
                        text generation
schirm20strep           Streptococcus pneumoniae infection data
simulate_acutevirusir_ode
                        Acute Virus Infection and IR Model
simulate_bacteria_fit   Fitting a simple bacteria infection models to
                        Streptococcus pneumoniae infection data
simulate_basicbacteria_discrete
                        Basic Bacteria model - discrete
simulate_basicbacteria_modelexploration
                        Simulation to illustrate parameter scan of the
                        basic bacteria model #'
simulate_basicbacteria_ode
                        Basic Bacteria model - ODE
simulate_basicvirus_fit
                        Fitting a simple viral infection models to
                        influenza data
simulate_basicvirus_modelexploration
                        Simulation to illustrate parameter scan of the
                        basic virus model #'
simulate_basicvirus_ode
                        Basic Virus Model
simulate_basicvirus_stochastic
                        Basic Virus Model
simulate_chronicvirusir_ode
                        Chronic Virus Infection and IR Model
simulate_confint_fit    Fit a simple viral infection model and compute
                        confidence intervals
simulate_drugresistance_stochastic
                        Stochastic simulation of a compartmental acute
                        virus infection model with treatment and drug
                        resistant strain
simulate_extendedbacteria_ode
                        Extended Bacteria model - ODE
simulate_fludrug_fit    Fitting a simple viral infection model with 2
                        types of drug mechanisms to influenza data
simulate_modelcomparison_fit
                        Fitting 2 simple viral infection models to
                        influenza data
simulate_modelvariants_ode
                        Simulation of a viral infection model with
                        immune response The simulation illustrates
                        different alternative models.
simulate_pkpdmodel_ode
                        PkPd Virus model
simulate_usanalysis     Simulation to illustrate uncertainty and
                        sensitivity analysis
simulate_virusandir_ode
                        Simulation of a viral infection model with an
                        immune response
simulate_virusandtx_ode
                        Simulation of a basic viral infection model
                        with drug treatment
