# Generated by roxygen2: do not edit by hand

export(KW.hit.express)
export(alex.boxplots)
export(alex.pathway)
export(alex.prep.lsn.expr)
export(alex.waterfall.plot)
export(alex.waterfall.prep)
export(compute.gw.coordinates)
export(count.hits)
export(default.grin.colors)
export(find.gene.lsn.overlaps)
export(genomewide.log10q.plot)
export(genomewide.lsn.plot)
export(get.chrom.length)
export(get.ensembl.annotation)
export(grin.assoc.lsn.outcome)
export(grin.barplt)
export(grin.lsn.boundaries)
export(grin.oncoprint.mtx)
export(grin.stats)
export(grin.stats.lsn.plot)
export(lsn.transcripts.plot)
export(onco.print.props)
export(order.index.gene.data)
export(order.index.lsn.data)
export(prep.binary.lsn.mtx)
export(prep.gene.lsn.data)
export(prep.lsn.type.matrix)
export(prob.hits)
export(top.alex.waterfall.plots)
export(write.grin.xlsx)
importFrom(circlize,read.chromInfo)
importFrom(data.table,setorder)
importFrom(dplyr,arrange)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(forcats,fct_reorder)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_jitter)
importFrom(ggplot2,position_stack)
importFrom(ggplot2,scale_fill_discrete)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rgb)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(grid,editGrob)
importFrom(grid,gpar)
importFrom(grid,grid.draw)
importFrom(grid,grid.grab)
importFrom(grid,grid.newpage)
importFrom(grid,grid.rect)
importFrom(grid,popViewport)
importFrom(grid,pushViewport)
importFrom(grid,viewport)
importFrom(magrittr,"%>%")
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,glm)
importFrom(stats,hclust)
importFrom(stats,kruskal.test)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pbeta)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stringr,str_split_fixed)
importFrom(survival,coxph)
importFrom(survival,is.Surv)
importFrom(tibble,rownames_to_column)
importFrom(tidyselect,starts_with)
importFrom(utils,head)
importFrom(utils,select.list)
importFrom(utils,stack)
importFrom(writexl,write_xlsx)
