Package: IDSL.CSA
Type: Package
Title: Composite Spectra Analysis (CSA) for High-Resolution Mass
        Spectrometry Analyses
Version: 1.2
Authors@R: c(
    person(family = "Fakouri-Baygi", given = "Sadjad", email = "sadjad.fakouri-baygi@mssm.edu",
           role = "aut", comment = c(ORCID = "0000-0002-6864-6911")),
    person(family = "Barupal", given = "Dinesh", email = "dinesh.barupal@mssm.edu", role = c("cre","aut"),
           comment = c(ORCID = "0000-0002-9954-8628")))
Depends: R (>= 4.0)
Imports: IDSL.MXP, IDSL.IPA, IDSL.FSA, readxl
Author: Sadjad Fakouri-Baygi [aut] (<https://orcid.org/0000-0002-6864-6911>),
  Dinesh Barupal [cre, aut] (<https://orcid.org/0000-0002-9954-8628>)
Maintainer: Dinesh Barupal <dinesh.barupal@mssm.edu>
Description: A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.
License: MIT + file LICENSE
URL: https://github.com/idslme/idsl.csa
BugReports: https://github.com/idslme/idsl.csa/issues
Encoding: UTF-8
Archs: i386, x64
NeedsCompilation: no
Packaged: 2023-06-27 21:43:18 UTC; sfbaygi
Repository: CRAN
Date/Publication: 2023-06-29 14:00:07 UTC
Built: R 4.6.0; ; 2026-04-25 23:27:29 UTC; unix
