MCMC.tree.plot          Plot time-scaled phylogenies
MCMCtree.output         MCMCtree.output
MCMCtreePhy             MCMCtreePhy
apeData                 ApeData Ape phylogeny in ape format,
                        monophyletic clades, and maximum and minimum
                        ages
estimateBound           Estimate a Uniform Distribution for MCMCtree
estimateCauchy          Estimate Cauchy Distribution for MCMCtree
estimateFixed           Fixed Age for MCMCtree analysis input
estimateGamma           Estimate Gamma Distribution for MCMCtree
                        analysis
estimateSkewNormal      Estimate Skew Normal for MCMCtree analysis
estimateSkewT           Estimate Skew-t Distribution for MCMCtree
                        analysis
estimateUpper           Estimate Upper Age for MCMCtree analysis
nodeToPhy               Add Node Constraints to Tree in MCMCtree Format
plotMCMCtree            Plot distribution from MCMCtree node
                        estimations
priorPosterior          priorPosterior
readMCMCtree            Read MCMCtree output tree into R
tipDes                  Find Descendent Tips From A Common Ancestor
