R: Query the Breeding Management System(s)

# Query the Breeding Management System(s)

## Documentation for package ‘QBMS’ version 2.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

brapi_get_call | Internal Function for Core BrAPI GET Calls
brapi_map | BrAPI Mapping Table
brapi_post_search_allelematrix | Internal Function Used for Core BrAPI POST Calls (Allele Matrix Search)
brapi_post_search_call | Internal Function Used for Core BrAPI POST Calls
build_pedigree_table | Building Pedigree Table Recursively
calc_biovars | Calculate the Bioclimatic Variables
debug_qbms | Debug Internal QBMS Status Object
get_async_page | Asynchronously Fetch a Single API Page
get_async_pages | Asynchronously Fetch Multiple API Pages
get_brapi_url | Get the BrAPI Endpoint URL for a given QBMS function
get_germplasm_attributes | Retrieve Attributes for a Specified Germplasm
get_germplasm_data | Retrieve Observations Data for a Specified Germplasm.
get_germplasm_id | Get Germplasm ID for a Specified Germplasm Name
get_germplasm_list | Get the Germplasm List of the Current Active Study
get_hwsd2 | Get HWSD v2 Soil Data for a Given Location(s)
get_login_details | Login Pop-Up Window
get_marker_map | Get marker position information
get_parents | Get Direct Parents
get_pedigree_table | Get the Pedigree Table
get_program_studies | Get the List of Trials, Studies, and Locations Information for the Current Selected Program
get_program_trials | Retrieve the List of Trials for the Active Breeding Program
get_qbms_connection | Get the QBMS Connection
get_study_data | Get the Observations Data of the Current Active Study
get_study_info | Get the Details/Metadata of the Current Active Study
get_terraclimate | Get TerraClimate Data for a Given Coordinate(s)
get_trial_data | Get the Observations Data of the Current Active Trial
get_trial_obs_ontology | Get the Traits Ontology/Metadata of the Current Active Trial
get_trial_pedigree | Get the Pedigree table for the Selected Trial
get_variants | Get Marker Matrix from the Selected Variant Set
get_variantset | Get Marker Matrix from the Selected Variant Set
gigwa_get_allelematrix | Get Markers Matrix in the Selected GIGWA Run
gigwa_get_markers | Get Markers Map in the Selected GIGWA Run
gigwa_get_metadata | Get the Metadata of the Current Active GIGWA Run
gigwa_get_samples | Get the Samples List of the Current Active GIGWA Project
gigwa_get_sequences | Get the Sequences of the Current Active GIGWA Project
gigwa_get_variants | Get Available Variants in the Selected GIGWA Run
gigwa_list_dbs | List GIGWA Databases
gigwa_list_projects | Get the List of All Projects in the Selected GIGWA Database
gigwa_list_runs | Get the List of the Run Names Available in the Selected GIGWA Project
gigwa_set_db | Set the Current Active GIGWA Database by Name
gigwa_set_project | Set the Current Active GIGWA Project
gigwa_set_run | Set the Current Active GIGWA Run
ini_hwsd2 | Download and Setup HWSD v2.0 Data Files to Extract their Data Offline
ini_terraclimate | Download TerraClimate netCDF Data Files to Extract their Data Offline
list_crops | Retrieve Supported Crops from the Server
list_locations | Get the List of Locations Information of the Current Selected Crop
list_programs | Retrieve Breeding Programs for the Active Crop
list_studies | Get the List of Studies in the Current Active Trial
list_trials | List Trials in the Current Active Breeding Program
list_variantsets | List Variant Sets in the Selected Study
login | Login to a BrAPI Server
login_bms | Login to the Server
login_breedbase | Login to the BreedBase Server
login_germinate | Login to the Germinate Server
login_gigwa | Login to the GIGWA Server
login_oauth2 | Login using OAuth 2.0 Authentication
rbindlistx | Make One Data.Table from a List of Many
rbindx | Combine Data Frames by Row, Filling in Missing Columns
scan_brapi_endpoints | Scan BrAPI Endpoints
set_crop | Set the Current Active Crop
set_program | Set the Current Active Breeding Program
set_qbms_config | Configure BMS Server Settings
set_qbms_connection | Set the QBMS Connection
set_study | Set the Current Active Study
set_token | Set Access Token Response
set_trial | Set the Current Active Trial
set_variantset | Set the Active Variant Set