RevGadgets              RevGadgets
calculateShiftBayesFactor
                        Bayes Factors in support of a shift in
                        diversification rates over a given time
                        interval.
colFun                  Color Function
combineTraces           Combine traces
densiTreeWithBranchData
                        DensiTree-style plot with branch-specific data
dropTip                 dropTip
geom_stepribbon         plot geom stepribbon for diversification rates
getMAP                  get MAP
matchNodes              match Nodes
plotAncStatesMAP        plot Ancestral States MAP
plotAncStatesPie        plot Ancestral States Pie
plotDivRates            Plot Diversification Rates
plotDiversityOBDP       Plot Diversity Distribution from OBDP Analysis
plotFBDTree             Plot FBD tree
plotHiSSE               plotHiSSE
plotMassExtinctions     Plot Mass Extinction Support
plotMuSSE               plotMuSSE
plotPopSizes            Plot Population Sizes
plotPostPredStats       plot Posterior Predictive Statistics
plotTrace               Plot trace
plotTree                Plot tree
plotTreeFull            Plot Full tree
posteriorSamplesToParametricPrior
                        Priors from MCMC samples
processAncStates        Process Ancestral States
processBranchData       processBranchData
processDivRates         Process Diversification Rates
processPopSizes         Process Population Sizes
processPostPredStats    process Posterior Predictive Statistics
processSSE              Title
readOBDP                Read OBDP Outputs
readTrace               Read trace
readTrees               Read trees
removeBurnin            Remove Burnin
rerootPhylo             Reroot Phylo
setMRFGlobalScaleHyperpriorNShifts
                        Sets a global scale parameter for a GMRF or
                        HSMRF model given a prior mean number of
                        effective shifts.
simulateMRF             Simulates a single Markov random field
                        trajectory.
summarizeTrace          Summarize trace
