AUEC                    Calculate the area under the cumulative
                        enrichment curve (AUEC) based on the interested
                        gene set.
DownloadKGML            Download the latest KGML files
NodeGene                Restract the relationship between nodes and
                        genes.
NodeGeneData            Intergate list of node,gene and the score of
                        node.
PathNetwork             Reconstruct pathways to networks
TPEA                    Statistical test and calculate the significance
TPEA-package            TPEA: A Novel Pathway enrichment analysis
                        approach based on topological structure and
                        updated annotation of pathway
UPDATE                  Update the latest data from KEGG database
ViewLatestTime          Check up the latest date of KGML files
all_genes               All human protein coding genes
filterNode              Filter the nodes in pathways
gene2ec                 The relationship of genes and EC
gene2ko                 The relationship of genes and KO
getEntry                Obtain the nodes
getGeneFromEnzyme       Obtain the genes from enzymes
getGeneFromKGene        Obtain the genes from KGenes
getGeneFromKO           Obtain the genes from KO
getGraphics             Recontructe the network based on pathways
getKGeneFromEnzyme      Obtain genes from KGnenes
getKGeneFromKO          Obtain the genes from KO
getNonMetabolicGraph    Convert the non-metaboloc pathway to network
getOrgAndIdType         Get the type names of nodes
getPathway              Get the pathway from KEGG database.
getProduct              Get the products
getReaction             Get the reaction of nodes in pathways
getRelation             Get the relation of nodes in pathways
getSimpleGraph          Obtain the graph of pathways
getSubstrate            Obtain the information about nodes in KEGG
                        database
getSubtype              Get the type of nodes
getUGraph               Obtain the graph of pathways
getUnknowProduct        Get the products
getUnknowReaction       Get the reaction of nodes in pathways
getUnknowRelation       Get the relation of nodes in pathways
getUnknowSubstrate      Obtain the information about nodes in KEGG
                        database
getUnknowSubtype        Obtain the types of genes in pathways
importLatesData         Import the latest relationship information.
keggGene2gene           KeggGene to genes
mapNode                 Obtain the relationship of nodes and genes
node_gene               The relationship between nodes and genes
num_node_gene_score     The score of each node in a certain pathway
pathway_names           Pathway names in KEGG Database
simplifyGraph           Recontructe the network based on pathways
viewpathway             The visualization of interested pathway based
                        on the genes you input, such as differentially
                        expressed genes.
