R: 'TRFLP' Analysis and Matching Package for R

# 'TRFLP' Analysis and Matching Package for R

## Documentation for package ‘TRAMPR’ version 1.0-10

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

TRAMPR-package | The TRAMPR Package (TRFLP Analysis and Matching Package for R)
add.known | Add Knowns To TRAMPknowns Databases
add.known.TRAMP | Add Knowns To TRAMPknowns Databases
add.known.TRAMPknowns | Add Knowns To TRAMPknowns Databases
build.knowns | Automatically Build Knowns Database
combine | Combine Two Objects
combine.TRAMP | Add Knowns To TRAMPknowns Databases
combine.TRAMPknowns | Add Knowns To TRAMPknowns Databases
combine.TRAMPsamples | Combine TRAMPsamples Objects
create.diffsmatrix | Calculate Matrix of Distances between Peaks
demo.knowns | Demonstration Knowns Database
demo.samples | Demonstration Samples Database
group.knowns | Knowns Clustering
group.knowns.TRAMP | Knowns Clustering
group.knowns.TRAMPknowns | Knowns Clustering
labels.TRAMPknowns | TRAMPknowns Objects
labels.TRAMPsamples | TRAMPsamples Objects
load.abi | Load ABI Output Files
load.abi.create.info | Load ABI Output Files
load.abi.create.template | Load ABI Output Files
peakscanner.to.genemapper | Load ABI Output Files
plot.TRAMP | Plot a TRAMP Object
plot.TRAMPknowns | Summary Plot of Knowns Data
plot.TRAMPsamples | Plot a TRAMPsamples Object
read.abi | Read ABI Output Files
read.TRAMPknowns | Read/Write TRAMPknowns and TRAMPsamples Objects
read.TRAMPsamples | Read/Write TRAMPknowns and TRAMPsamples Objects
rebuild.TRAMP | Rebuild a TRAMP Object
remove.TRAMP.match | Mark a TRAMP Match as Ignored
summary.TRAMP | Create Presence/Absence Matrices from TRAMP Objects
summary.TRAMPknowns | TRAMPknowns Objects
summary.TRAMPsamples | TRAMPsamples Objects
TRAMP | TRFLP Analysis and Matching Program
TRAMP.plotone | Plot a TRAMP Object
TRAMPindexing | Index (Subset) TRAMPsamples and TRAMPknowns Objects
TRAMPknowns | TRAMPknowns Objects
TRAMPR | The TRAMPR Package (TRFLP Analysis and Matching Package for R)
TRAMPsamples | TRAMPsamples Objects
TRAMPsamples.plotone | Plot a TRAMPsamples Object
update.TRAMP | Interactively Alter a TRAMP Object
write.TRAMPknowns | Read/Write TRAMPknowns and TRAMPsamples Objects
write.TRAMPsamples | Read/Write TRAMPknowns and TRAMPsamples Objects
[.TRAMPknowns | Index (Subset) TRAMPsamples and TRAMPknowns Objects
[.TRAMPsamples | Index (Subset) TRAMPsamples and TRAMPknowns Objects