TRAMP                   TRFLP Analysis and Matching Program
TRAMPR-package          The TRAMPR Package (TRFLP Analysis and Matching
                        Package for R)
TRAMPindexing           Index (Subset) TRAMPsamples and TRAMPknowns
                        Objects
TRAMPknowns             TRAMPknowns Objects
TRAMPsamples            TRAMPsamples Objects
add.known               Add Knowns To TRAMPknowns Databases
build.knowns            Automatically Build Knowns Database
combine                 Combine Two Objects
combine.TRAMPsamples    Combine TRAMPsamples Objects
create.diffsmatrix      Calculate Matrix of Distances between Peaks
demo.knowns             Demonstration Knowns Database
demo.samples            Demonstration Samples Database
group.knowns            Knowns Clustering
load.abi                Load ABI Output Files
plot.TRAMP              Plot a TRAMP Object
plot.TRAMPknowns        Summary Plot of Knowns Data
plot.TRAMPsamples       Plot a TRAMPsamples Object
read.TRAMPknowns        Read/Write TRAMPknowns and TRAMPsamples Objects
read.abi                Read ABI Output Files
rebuild.TRAMP           Rebuild a TRAMP Object
remove.TRAMP.match      Mark a TRAMP Match as Ignored
summary.TRAMP           Create Presence/Absence Matrices from TRAMP
                        Objects
update.TRAMP            Interactively Alter a TRAMP Object
