R: Circular-Linear Copulas with Angular Symmetry for Movement Data

# Circular-Linear Copulas with Angular Symmetry for Movement Data

## Documentation for package ‘cylcop’ version 0.2.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

A B C D F G H J L M N O P Q R S T V W

## -- A --

angstep2xy | Calculate the Next Position in a Trajectory from a Turn Angle and a Step Length

## -- B --

bearing | Compass Bearing of a Line Between 2 Points

## -- C --

ccylcop | Conditional Distributions of Circular-Linear Copulas
ccylcop-method | Conditional Distributions of Circular-Linear Copulas
circ_plot | Deprecated functions
cop_plot | Deprecated functions
cop_scat_plot | Deprecated functions
cor_cyl | Estimate a Rank-Based Circular-Linear Correlation Coefficient
cramer_vonmises | Cramér-von-Mises criterion
Cylcop | Distribution, Density, and Random Number Generation for Circular-Linear Copulas'
cylcop-deprecated | Deprecated functions
cylcop_get_option | Get Package Options
cylcop_set_option | Set Package Options
cyl_copula-class | An S4 Class of Bivariate Copulas on the Cylinder
cyl_cubsec | Construction of "cyl_cubsec" Objects
cyl_cubsec-class | An S4 Class of Bivariate Copulas with Cubic Sections
cyl_quadsec | Construction of "cyl_quadsec" Objects
cyl_quadsec-class | An S4 Class of Bivariate Copulas with Quadratic Sections
cyl_rect_combine | Construction of "cyl_rect_combine" Objects
cyl_rect_combine-class | An S4 Class of Circular-Linear Copulas Generated from a Rectangular Patchwork
cyl_rot_combine | Construction of "cyl_rot_combine" Objects
cyl_rot_combine-class | An S4 Class of Circular-Linear Copulas generated from Linear Combinations of Copulas
cyl_vonmises | Construction of "cyl_vonmises" Objects
cyl_vonmises-class | An S4 Class of Bivariate von Mises Copulas

## -- D --

dcylcop | Distribution, Density, and Random Number Generation for Circular-Linear Copulas'
dcylcop-method | Distribution, Density, and Random Number Generation for Circular-Linear Copulas'
ddens | Density, Distribution, Random Number Generation and Quantiles of Kernel Density Estimates
dens | Density, Distribution, Random Number Generation and Quantiles of Kernel Density Estimates
dgammamix | Density, Distribution, Quantiles and Random Number Generation for the mixed gamma distribution
djoint | Density, Distribution, Quantiles and Random Number Generation for joint distributions
dlnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed log-normal distribution
dnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed normal distribution
dvonmisesmix | Density, Distribution, Quantiles and Random Number Generation for the mixed von Mises Distribution
dweibullmix | Density, Distribution, Quantiles and Random Number Generation for the mixed Weibull distribution
dwrappedcauchy | Density, Distribution, Quantiles and Random Number Generation for the Wrapped Cauchy Distribution

## -- F --

fit_angle | Fit a Circular Univariate Distribution
fit_cylcop_cor | Estimate Copula Parameters from Correlation Measures
fit_cylcop_cor-method | Estimate Copula Parameters from Correlation Measures
fit_cylcop_ml | Estimate Parameters of a Circular-Linear Copula According to Maximum Likelihood
fit_steplength | Fit a Linear Univariate Distribution
full2half_circ | Convert Angle from Full Circle to Half Circle

## -- G --

gammamix | Density, Distribution, Quantiles and Random Number Generation for the mixed gamma distribution

## -- H --

half2full_circ | Convert Angle from Half Circle to Full Circle

## -- J --

joint | Density, Distribution, Quantiles and Random Number Generation for joint distributions

## -- L --

lnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed log-normal distribution

## -- M --

make_traj | Deprecated functions
mi_cyl | Estimate the Mutual Information Between a Circular and a Linear Random Variable
mle.mixedvonmises | Deprecated functions
mle.vonmisesmix | Mixed von Mises Maximum Likelihood Estimates

## -- N --

normmix | Density, Distribution, Quantiles and Random Number Generation for the mixed normal distribution
numerical_conditional_cop | Numerically Calculate the Conditional Copula
numerical_inv_conditional_cop | Numerically calculate the inverse of the conditional copula

## -- O --

optCor | Estimate Copula Parameters from Correlation Measures
optML | Estimate Parameters of a Circular-Linear Copula According to Maximum Likelihood
opt_auto | Automatically Find the Best Fitting Copula
opt_circ_bw | Find the Optimal Bandwidth for a Circular Kernel Density Estimate
opt_lin_bw | Find the Optimal Bandwidth for a Linear Kernel Density Estimate

## -- P --

pcylcop | Distribution, Density, and Random Number Generation for Circular-Linear Copulas'
pcylcop-method | Distribution, Density, and Random Number Generation for Circular-Linear Copulas'
pdens | Density, Distribution, Random Number Generation and Quantiles of Kernel Density Estimates
pgammamix | Density, Distribution, Quantiles and Random Number Generation for the mixed gamma distribution
pjoint | Density, Distribution, Quantiles and Random Number Generation for joint distributions
plnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed log-normal distribution
plot-method | Plot "cyl_copula" Objects
plot_circ_hist | Circular Histogram of Turn Angles
plot_cop_scat | Scatterplot of Copula Values
plot_cop_surf | Surface Plot or Heat Map of the Distribution or the Density of a Copula
plot_joint_box | Circular Boxplot of Turn Angles and Step Lengths
plot_joint_circ | Circular Scatterplot of Turn Angles and Step Lengths
plot_joint_scat | Scatterplot of Turn Angles and Step Lengths
plot_track | Plot a Trajectory in Euclidean Space
pnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed normal distribution
prob | Calculate the C-Volume of a "cyl_copula" Copula
prob-method | Calculate the C-Volume of a "cyl_copula" Copula
pvonmisesmix | Density, Distribution, Quantiles and Random Number Generation for the mixed von Mises Distribution
pweibullmix | Density, Distribution, Quantiles and Random Number Generation for the mixed Weibull distribution
pwrappedcauchy | Density, Distribution, Quantiles and Random Number Generation for the Wrapped Cauchy Distribution

## -- Q --

qdens | Density, Distribution, Random Number Generation and Quantiles of Kernel Density Estimates
qgammamix | Density, Distribution, Quantiles and Random Number Generation for the mixed gamma distribution
qlnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed log-normal distribution
qmixedvonmises | Deprecated functions
qnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed normal distribution
qvonmisesmix | Density, Distribution, Quantiles and Random Number Generation for the mixed von Mises Distribution
qweibullmix | Density, Distribution, Quantiles and Random Number Generation for the mixed Weibull distribution
qwrappedcauchy | Density, Distribution, Quantiles and Random Number Generation for the Wrapped Cauchy Distribution

## -- R --

rcylcop | Distribution, Density, and Random Number Generation for Circular-Linear Copulas'
rcylcop-method | Distribution, Density, and Random Number Generation for Circular-Linear Copulas'
rdens | Density, Distribution, Random Number Generation and Quantiles of Kernel Density Estimates
rgammamix | Density, Distribution, Quantiles and Random Number Generation for the mixed gamma distribution
rjoint | Density, Distribution, Quantiles and Random Number Generation for joint distributions
rlnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed log-normal distribution
rnormmix | Density, Distribution, Quantiles and Random Number Generation for the mixed normal distribution
rvonmisesmix | Density, Distribution, Quantiles and Random Number Generation for the mixed von Mises Distribution
rweibullmix | Density, Distribution, Quantiles and Random Number Generation for the mixed Weibull distribution
rwrappedcauchy | Density, Distribution, Quantiles and Random Number Generation for the Wrapped Cauchy Distribution

## -- S --

scat_plot | Deprecated functions
set_cop_param | Change Attributes of "cyl_copula" Objects
set_cop_param-method | Change Attributes of "cyl_copula" Objects
show-method | Print Information of "cyl_copula" Objects
silent | Set Package Options

## -- T --

traj_get | Get a Trajectory from Coordinates
traj_plot | Deprecated functions
traj_sim | Generate a Trajectory with Correlated Step Lengths and Turn Angles

## -- V --

verbose, | Set Package Options
vonmisesmix | Density, Distribution, Quantiles and Random Number Generation for the mixed von Mises Distribution

## -- W --

wasserstein | Calculate the Wasserstein Distance
weibullmix | Density, Distribution, Quantiles and Random Number Generation for the mixed Weibull distribution
wrappedcauchy | Density, Distribution, Quantiles and Random Number Generation for the Wrapped Cauchy Distribution