as.evoTS.multi.BW.acceldecel.fit
                        Class for fit to evolutionary sequence
                        (time-series) models
as.evoTS.multi.BW.fit   Class for fit to evolutionary sequence
                        (time-series) models
as.evoTS.multi.OU.fit   Class for fit to evolutionary sequence
                        (time-series) models
as.evoTS.multi.URW.fit
                        Class for fit to evolutionary sequence
                        (time-series) models
as.evoTS.multi.URW.shift.fit
                        Class for fit to evolutionary sequence
                        (time-series) models
as.evoTSfit.OUBM        Class for fit to evolutionary sequence
                        (time-series) models
diameter_S.yellowstonensis
                        Evolutionary sequence (time-series) of
                        phenotypic change in diameter in the lineage
                        Stephanodiscus yellowstonensis
fit.all.univariate      Fit all univariate models to an evolutionary
                        sequence (time-series).
fit.mode.shift          Fit two models to two separate segments to an
                        evolutionary sequence (time-series).
fit.multivariate.OU     Fit predefined multivariate Ornstein-Uhlenbeck
                        models to multivariate evolutionary sequence
                        (time-series) data.
fit.multivariate.OU.user.defined
                        Fit user-defined multivariate
                        Ornstein-Uhlenbeck models to multivariate
                        evolutionary sequence (time-series) data.
fit.multivariate.URW    Fit multivariate Unbiased Random Walk models to
                        multivariate evolutionary sequence
                        (time-series) data.
fit.multivariate.URW.shift
                        Fit separate multivariate Unbiased Random Walk
                        models to two different segments of a
                        multivariate evolutionary sequence
                        (time-series).
logL.joint.OU.BM        Log-likelihoods for evolutionary models
logL.joint.Stasis.OU    Log-likelihoods for evolutionary models
logL.joint.URW.URW      Log-likelihoods for evolutionary models
logL.joint.accel.decel.single.R
                        Log-likelihoods for evolutionary models
logL.joint.accel.decel.single.R.zero.corr
                        Log-likelihoods for evolutionary models
logL.joint.accel_decel
                        Log-likelihoods for evolutionary models
logL.joint.multi.OUOU   Log-likelihoods for evolutionary models
logL.joint.multi.OUOU.user
                        Log-likelihoods for evolutionary models
logL.joint.multi.R      Log-likelihoods for evolutionary models
logL.joint.single.R     Log-likelihoods for evolutionary models
logL.joint.single.R.zero.corr
                        Log-likelihoods for evolutionary models
loglik.surface.GRW      Calculate the log-likelihood surface for a part
                        of parameter space
loglik.surface.OU       Calculate the log-likelihood surface for a part
                        of parameter space
loglik.surface.OUBM     Calculate the log-likelihood surface for a part
                        of parameter space
loglik.surface.URW      Calculate the log-likelihood surface for a part
                        of parameter space
loglik.surface.accel    Calculate the log-likelihood surface for a part
                        of parameter space
loglik.surface.decel    Calculate the log-likelihood surface for a part
                        of parameter space
loglik.surface.stasis   Calculate the log-likelihood surface for a part
                        of parameter space
make.multivar.evoTS     Makes a multivariate data set of
opt.accel.single.R      Fit multivariate Unbiased Random Walk with
                        increasing (exponential accelerating) rate of
                        change through time.
opt.accel.single.R.zero.corr
                        Fit multivariate Unbiased Random Walk model
                        with uncorrelated trait changes and with
                        increasing (exponential accelerating) rate of
                        change through time.
opt.decel.single.R      Fit multivariate Unbiased Random Walk with
                        decreasing (exponential decaying) rate of
                        change through time.
opt.decel.single.R.zero.corr
                        Fit multivariate Unbiased Random Walk model
                        with uncorrelated trait changes and with
                        decreasing (exponential decaying) rate of
                        change through time.
opt.joint.OUBM          Fit an Ornstein-Uhlenbeck model with an optimum
                        that evolves according to a Unbiased Random
                        Walk.
opt.joint.URW.Stasis    Optimization and log-likelihoods for pairs of
                        models.
opt.joint.accel         Fit an Unbiased Random Walk with an
                        accelerating rate of change through time.
opt.joint.decel         Fit an Unbiased Random Walk with an
                        decelerating rate of change through time.
opt.single.R            Fit multivariate Unbiased Random Walk model.
opt.single.R.zero.corr
                        Fit multivariate Unbiased Random Walk model
                        with uncorrelated trait changes.
plotevoTS               Plot a paleoTS object
plotevoTS.multivariate
                        Plots multivariate evolutionary sequence
                        (time-series) data set
ribs_S.yellowstonensis
                        Evolutionary sequence (time-series) of
                        phenotypic change in the number of ribs in the
                        lineage Stephanodiscus yellowstonensis
sim.OUBM                Simulate an Ornstein-Uhlenbeck process with
                        optimum changing according to an unbiased
                        random walk
sim.accel.decel         Simulate an Unbiased Random Walk with an
                        accelerating or decelerating rate of change
                        through time.
sim.multi.OU            Simulate multivariate Ornstein-Uhlenbeck
                        evolutionary sequence data sets
sim.multi.URW           Simulate multivariate evolutionary sequence
                        data that evolve according to an Unbiased
                        Random Walk
