R: Bayesian Inference of Binary, Count and Continuous Data in Toxicology

# Bayesian Inference of Binary, Count and Continuous Data in Toxicology

## Documentation for package ‘morseDR’ version 0.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

binaryData | Creates a data set for binary data analysis
binaryData.data.frame | Creates a data set for binary data analysis
binaryDataCheck | Checking object structure for analysis
cadmium1 | Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with Daphnia
cadmium2 | Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with snails
cadmium_daphnia | Continuous response of toxicity test of cadmium on Daphnia
CheckData | Checking object structure for analysis
chlordan | Reproduction and survival data sets of chronic laboratory toxicity tests of chlordan with Daphnia
chlordan_daphnia | Continuous response of toxicity test of chlordan on Daphnia
continuousData | Creates a data set for binary data analysis
continuousData.data.frame | Creates a data set for binary data analysis
continuousDataCheck | Checking object structure for analysis
copper | Reproduction and survival data sets of chronic laboratory toxicity tests of copper on Daphnia
copper_daphnia | Continuous response of toxicity test of copper on Daphnia
countData | Creates a data set for binary data analysis
countData.data.frame | Creates a data set for binary data analysis
countDataCheck | Checking object structure for analysis
dichromate | Survival data set of chronic laboratory toxicity tests of dichromate with Daphnia
DoseResponse | Prepare data for Dose-Reponse
doseResponse | Prepare data for Dose-Reponse
doseResponse.BinaryData | Prepare data for Dose-Reponse
doseResponse.ContinuousData | Prepare data for Dose-Reponse
doseResponse.CountData | Prepare data for Dose-Reponse
extract_sim | Extract simulation from the fit
fit | Fits a Bayesian concentration-response model for target-time
fit.BinaryData | Fits a Bayesian concentration-response model for target-time
fit.ContinuousData | Fits a Bayesian concentration-response model for target-time
fit.CountData | Fits a Bayesian concentration-response model for target-time
FitTT | Fits a Bayesian concentration-response model for target-time
ModelData | Creates a data set for binary data analysis
modelData | Creates a data set for binary data analysis
modelData.data.frame | Creates a data set for binary data analysis
plant01 | Continuous response of toxicity test on plants
plant02 | Continuous response of toxicity test on plants
plant03 | Continuous response of toxicity test on plants
plant04 | Continuous response of toxicity test on plants
plant05 | Continuous response of toxicity test on plants
plant06 | Continuous response of toxicity test on plants
plant07 | Continuous response of toxicity test on plants
plant08 | Continuous response of toxicity test on plants
plant09 | Continuous response of toxicity test on plants
plant10 | Continuous response of toxicity test on plants
plot.BinaryData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
plot.BinaryDoseResponse | Plot dose-response from 'DoseResponse' objects
plot.BinaryFitTT | Plotting method for 'FitTT' objects.
plot.ContinuousData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
plot.ContinuousDoseResponse | Plot dose-response from 'DoseResponse' objects
plot.ContinuousFitTT | Plotting method for 'FitTT' objects.
plot.CountData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
plot.CountDoseResponse | Plot dose-response from 'DoseResponse' objects
plot.CountFitTT | Plotting method for 'FitTT' objects.
plot.DoseResponse | Plot dose-response from 'DoseResponse' objects
plot.PPC | Plot the Posterior Predictive Chack on an object 'PPC'
plot.PriorPosterior | Return Prior and Posterior density of parameters of 'FitTT' object
plot.XCX | Plot an object 'XCX'
PlotData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
PlotDoseResponse | Plot dose-response from 'DoseResponse' objects
PlotFitTT | Plotting method for 'FitTT' objects.
PlotPPC | Plot the Posterior Predictive Chack on an object 'PPC'
PlotRiskMeasure | Plot an object 'XCX'
posterior | Return Prior and Posterior density of parameters of 'FitTT' object
posterior.FitTT | Return Prior and Posterior density of parameters of 'FitTT' object
PPC | Posterior Predictive Check data.frame for 'FitTT' objects
ppc | Posterior Predictive Check data.frame for 'FitTT' objects
ppc.BinaryFitTT | Posterior Predictive Check data.frame for 'FitTT' objects
ppc.ContinuousFitTT | Posterior Predictive Check data.frame for 'FitTT' objects
ppc.CountFitTT | Posterior Predictive Check data.frame for 'FitTT' objects
Predict | Prediction base on 'FitTT'
predict | Prediction base on 'FitTT'
predict.BinaryFitTT | Prediction base on 'FitTT'
predict.ContinuousFitTT | Prediction base on 'FitTT'
predict.CountFitTT | Prediction base on 'FitTT'
PriorPosterior | Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior | Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior.BinaryFitTT | Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior.ContinuousFitTT | Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior.CountFitTT | Return Prior and Posterior density of parameters of 'FitTT' object
propiconazole | Survival data set of chronic laboratory toxicity tests of propiconazole with Gammarus pulex
reco27 | Continuous response of toxicity test
RiskMeasure | Predict X% Concentration at the target time (default).
subst01_lymnaea | Continuous response of toxicity test on snails
Summary | Summary of 'FitTT' object
summary.BinaryFitTT | Summary of 'FitTT' object
summary.ContinuousFitTT | Summary of 'FitTT' object
summary.CountFitTT | Summary of 'FitTT' object
summary.PPC | Summary of 'FitTT' object
xcx | Predict X% Concentration at the target time (default).
xcx.FitTT | Predict X% Concentration at the target time (default).
zinc | Reproduction and survival data sets of a chronic laboratory toxicity tests of zinc with Daphnia
zinc_daphnia | Continuous response of toxicity test of zinc on Daphnia