exData                  Example dataset
matrices                Example cluster matrices
msc.depth               Check the read depth of assembled minicircles
msc.heatmap             Visualization of cluster matrices
msc.length              Length of minicircles
msc.matrix              Build cluster matrix
msc.pca                 Prinicple Component Analysis based on MSC
msc.quality             Check the quality of the assembly
msc.richness            Minicircle Sequence Cluster richness
msc.seqs                Retrieve sequences
msc.similarity          Minicircle Sequence Classes similarity
msc.subset              Specific Minicircle Sequence Classes
msc.uc                  Cluster Analyses
preprocess              Filtering of minicircle sequences
rKOMICS                 Minicircle Sequence Classes (MSC) Analyses
read.uc                 Read in uc files
