R: SPecies Association Analysis

# SPecies Association Analysis

## Documentation for package ‘spaa’ version 0.2.5

- DESCRIPTION file
- Package README

## Help Pages

spaa-package | SPecies Association Analysis
data2mat | Convert field records to community matrix
datasample | A sample dataset for a community
deg2dec | Degree to decimal
dist2list | Convert distance matrix to pairwised list
freq.calc | Compute species' relative frequency
geodist | Hight precision Great circle distance between two places
lab.mat | Convert vector of XY labels to label matrix
lgeodist | Low precision Great circle distance between two places
list2dist | Convert pairwise list to distance matrix
niche.overlap | Niche overlap between each pair of species
niche.overlap.boot | Boostrap niche overlap indices
niche.overlap.boot.pair | Boostrap the niche overlap indices
niche.overlap.pair | Compute niche overlap index between two species
niche.width | Niche width
sp.assoc | Analyzing species association
sp.pair | Species association between each pair of species
spaa | SPecies Association Analysis
splist | A sample dataframe showing species taxonomic information (Deprecated)
sub.sp.matrix | Subset species based on relative frequency
testdata | A sample dataset s
turnover | Calculating species turnover
XYname | Generating vector of XY labels