R: Web-Based Interactive Omics Visualization

# Web-Based Interactive Omics Visualization

## Documentation for package ‘wilson’ version 2.4.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

and | AND module server logic
andUI | AND module UI representation
categoricalPalettes | Function to generate categorical (qualitative) color palettes
Clarion | Clarion R6-class definition
colorPicker | colorPicker module server logic
colorPickerUI | colorPicker module UI representation
columnSelector | columnSelector module server logic
columnSelectorUI | columnSelector module UI representation
create_geneview | Method for geneView creation
create_heatmap | Method for heatmap creation
create_pca | Method for pca creation.
create_scatterplot | Method for scatter plot creation
divergingPalettes | Function to generate diverging (two-sided) color palettes (e.g. for log2fc, zscore)
download | Function used for downloading. Creates a zip container containing plot in png, pdf and user input in json format. Use inside 'downloadHandler' content function.
equalize | Method to get equalized min/max values from vector
featureSelector | featureSelector module server logic
featureSelectorGuide | featureSelector module guide
featureSelectorUI | featureSelector module UI representation
forceArgs | Force evaluation of the parent function's arguments.
geneView | geneView's module server logic
geneViewGuide | geneView module guide
geneViewUI | geneView's module UI representation
global_cor_heatmap | global correlation heatmap module server logic
global_cor_heatmapUI | global correlation heatmap module UI representation
global_cor_heatmap_guide | global correlation heatmap module guide
heatmap | heatmap module server logic
heatmapGuide | heatmap module guide
heatmapUI | heatmap module UI representation
install_app | Download and install Wilson Apps
label | label module server logic
labelUI | label module UI representation
limit | limit module server logic
limitUI | limit module UI representation
log_message | logger message convenience function
marker | marker module server logic
markerUI | marker module UI representation
orNumeric | orNumeric module server logic
orNumericUI | orNumeric module UI representation
orTextual | orTextual module server logic
orTextualUI | orTextual module UI representation
parser | Method to parse input file.
parse_MaxQuant | Converting MaxQuant Output file proteinGroups.txt to CLARION format by creating a headline of metadata for each column
pca | pca module server logic
pcaGuide | pca module guide
pcaUI | pca module UI representation
release_questions | Defines additional questions asked before CRAN submission. DO NOT EXPORT!
scatterPlot | scatterPlot module server logic
scatterPlotGuide | scatterPlot module guide
scatterPlotUI | scatterPlot module UI representation
searchData | Function to search data for selection
sequentialPalettes | Function to generate sequential (one-sided) color palettes (e.g. for expression, enrichment)
set_logger | set a log4r logger used within the package
tobias_parser | TOBIAS TFBS table to clarion parser
transformation | transformation module server logic
transformationUI | transformation module UI representation