ALF                     Generate ALF report
APEX                    Training, testing and validation of APEX
                        peptide observability models
APEXMS                  Calculating absolute and relative protein
                        abundance from mass spectrometry-based protein
                        expression data.
AbsoluteQuantification
                        Absolute label-free quantification of mass
                        spectrometry proteomics experiments
LUDWIGMS                Estimation of Absolute Protein Quantities of
                        Unlabeled Samples by Selected Reaction
                        Monitoring Mass Spectrometry..
PeptideInference        Peptide inference for aLFQ import data frame
ProteinInference        Protein inference for aLFQ import data frame
UPS2MS                  Calculating absolute and relative protein
                        abundance from mass spectrometry-based protein
                        expression data.
aLFQ-package            aLFQ
apexFeatures            Calculation of physicochemical amino acid
                        properties for APEX
import                  import of mass spectrometry proteomics data
                        analysis software reports.
proteotypic             Prediction of the flyability of proteotypic
                        peptides
