R: Genetic Relatedness Between Polyclonal Infections

# Genetic Relatedness Between Polyclonal Infections

## Documentation for package ‘dcifer’ version 1.5.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

calcAfreq | Calculate Allele Frequencies
dres | Dcifer results
dsmp | Sample data
format | Read and Reformat Data
formatAfreq | Read and Reformat Data
formatDat | Read and Reformat Data
generateReval | Grid of Parameter Values
getCOI | Calculate COI
ibdDat | Pairwise Relatedness
ibdEstM | Estimate Relatedness and a Number of Related Strains
ibdPair | Relatedness Between Two Samples
logReval | Logarithms of 'reval'
matchAfreq | Match Samples and Allele Frequencies
mixMat | Combine two matrices
plotColorbar | Colorbar
plotRel | Plot Relatedness Estimates
probUxUy | Likelihood for U_x, U_y
readAfreq | Read and Reformat Data
readDat | Read and Reformat Data
revals | Parameter grid