CviCol                  Arabidopsis thaliana genotype data
R.approx                The expectation of covariance using
                        approximation method
R.gibbs                 The expectation of covariance matrix using
                        Gibbs sampling
buildMap                linkage group detection and ordering markers
                        for class "netgwasmap"
cal.pos                 Estimate genetic map distances
cross2netgwas           'cross' object to 'netgwas' data frame
cutoffs                 Cut-points
detect.err              Identiying likely genotyping error
lower.upper             Calculates lower band and upper band
netgwas-package         Network Based Genome Wide Association Studies
netgwas2cross           netgwasmap object to cross object
netmap                  Constructing linkage map for diploids and
                        polyploids
netphenogeno            Reconstructs conditional dependence network
                        among genetic loci and phenotypes
netsnp                  Reconstructs intra- and inter- chromosomal
                        conditional interactions among genetic loci
plot.netgwas            plot for S3 class "netgwas"
plot.netgwasmap         plot for S3 class "netgwasmap"
plot.select             Plot function for S3 class "select"
plot.simgeno            Plot function for 'S3' class '"simgeno"'
print.netgwas           Print function for S3 class "netgwas"
print.netgwasmap        Print function for S3 class "netgwasmap"
print.select            Print function for S3 class "select"
print.simgeno           Print function for S3 class "simgeno"
selectnet               Model selection
simRIL                  Generate genotype data of RIL
simgeno                 Generate genotype data based on Gaussian copula
tetraPotato             tetraploid potato genotype data
thaliana                Arabidopsis thaliana phenotype and genotype
                        data
