CRAN Package Check Results for Package PatientProfiles

Last updated on 2024-08-05 09:48:14 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1 9.97 974.01 983.98 OK
r-devel-linux-x86_64-debian-gcc 1.1.1 4.99 477.05 482.04 OK
r-devel-linux-x86_64-fedora-gcc 1.1.1 1102.81 OK
r-devel-windows-x86_64 1.1.1 9.00 494.00 503.00 OK
r-patched-linux-x86_64 1.1.1 7.62 699.26 706.88 OK
r-release-linux-x86_64 1.1.1 5.58 920.04 925.62 OK
r-release-macos-arm64 1.1.1 227.00 OK
r-release-macos-x86_64 1.1.1 526.00 OK
r-release-windows-x86_64 1.1.1 10.00 473.00 483.00 OK
r-oldrel-macos-arm64 1.1.1 356.00 ERROR
r-oldrel-macos-x86_64 1.1.1 742.00 ERROR
r-oldrel-windows-x86_64 1.1.1 12.00 660.00 672.00 OK

Check Details

Version: 1.1.1
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘concept-intersect.Rmd’ ... > ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain, + ta .... [TRUNCATED] When sourcing ‘concept-intersect.R’: Error: ℹ In argument: `161_acetaminophen_minf_to_inf` Caused by error: ! Object `161_acetaminophen_minf_to_inf` not found. Execution halted Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. ‘cohort-intersect.Rmd’ using ‘UTF-8’... [21s/28s] OK ‘concept-intersect.Rmd’ using ‘UTF-8’... failed ‘demographics.rmd’ using ‘UTF-8’... [14s/18s] OK ‘summarise.Rmd’ using ‘UTF-8’... [21s/31s] OK ‘table-intersect.Rmd’ using ‘UTF-8’... [13s/15s] OK Flavor: r-oldrel-macos-arm64

Version: 1.1.1
Check: re-building of vignette outputs
Result: NOTE Error(s) in re-building vignettes: --- re-building ‘cohort-intersect.Rmd’ using rmarkdown --- finished re-building ‘cohort-intersect.Rmd’ Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. --- re-building ‘concept-intersect.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB Quitting from lines 185-229 [unnamed-chunk-11] (concept-intersect.Rmd) Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics: ℹ In argument: `161_acetaminophen_minf_to_inf` Caused by error: ! Object `161_acetaminophen_minf_to_inf` not found. --- failed re-building ‘concept-intersect.Rmd’ Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. --- re-building ‘demographics.rmd’ using rmarkdown --- finished re-building ‘demographics.rmd’ Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. --- re-building ‘summarise.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘summarise.Rmd’ Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. --- re-building ‘table-intersect.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘table-intersect.Rmd’ Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. SUMMARY: processing the following file failed: ‘concept-intersect.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.1
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘concept-intersect.Rmd’ ... > ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain, + ta .... [TRUNCATED] When sourcing ‘concept-intersect.R’: Error: ℹ In argument: `161_acetaminophen_minf_to_inf` Caused by error: ! Object `161_acetaminophen_minf_to_inf` not found. Execution halted Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. ‘cohort-intersect.Rmd’ using ‘UTF-8’... [36s/68s] OK ‘concept-intersect.Rmd’ using ‘UTF-8’... failed ‘demographics.rmd’ using ‘UTF-8’... [31s/66s] OK ‘summarise.Rmd’ using ‘UTF-8’... [35s/62s] OK ‘table-intersect.Rmd’ using ‘UTF-8’... [24s/39s] OK Flavor: r-oldrel-macos-x86_64