CRAN Package Check Results for Package pubh

Last updated on 2024-08-01 09:50:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.2 10.63 202.87 213.50 ERROR
r-devel-linux-x86_64-debian-gcc 1.3.2 7.58 154.04 161.62 ERROR
r-devel-linux-x86_64-fedora-clang 1.3.2 274.98 ERROR
r-devel-linux-x86_64-fedora-gcc 1.3.2 399.88 OK
r-devel-windows-x86_64 1.3.2 15.00 171.00 186.00 ERROR
r-patched-linux-x86_64 1.3.2 14.93 195.13 210.06 ERROR
r-release-linux-x86_64 1.3.2 7.03 191.51 198.54 ERROR
r-release-macos-arm64 1.3.2 105.00 OK
r-release-macos-x86_64 1.3.2 162.00 OK
r-release-windows-x86_64 1.3.2 16.00 169.00 185.00 ERROR
r-oldrel-macos-arm64 1.3.2 97.00 OK
r-oldrel-macos-x86_64 1.3.2 217.00 OK
r-oldrel-windows-x86_64 1.3.2 17.00 208.00 225.00 ERROR

Check Details

Version: 1.3.2
Check: examples
Result: ERROR Running examples in ‘pubh-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: cosm_reg > ### Title: Cosmetics for tables of regression coefficients. Converts tables > ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics. > ### Aliases: cosm_reg > > ### ** Examples > > require(sjlabelled, quietly = TRUE) Attaching package: ‘sjlabelled’ The following object is masked from ‘package:huxtable’: set_label The following object is masked from ‘package:ggplot2’: as_label > > data(diet, package = "Epi") > diet <- diet %>% + var_labels( + chd = "Coronary Heart Disease", + fibre = "Fibre intake (g/day)" + ) > > model_binom <- glm(chd ~ fibre, data = diet, family = binomial) > > model_binom %>% + tbl_regression(exponentiate = TRUE) %>% + cosm_reg(bold = TRUE) %>% + theme_pubh(1) %>% + add_footnote(get_r2(model_binom), font_size = 9) Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) : The package "broom.helpers" (>= 1.15.0) is required. Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed Vanderpump 5.938 0.118 7.084 Bernard 5.668 0.232 7.497 Rothman 5.505 0.106 6.141 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23111 bytes Input file size = 23213 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 Output IDAT size = 18532 bytes (4579 bytes decrease) Output file size = 18610 bytes (4603 bytes = 19.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11387 bytes Input file size = 11477 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9602 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9602 Output IDAT size = 9602 bytes (1785 bytes decrease) Output file size = 9680 bytes (1797 bytes = 15.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12096 bytes Input file size = 12186 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10060 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10060 Output IDAT size = 10060 bytes (2036 bytes decrease) Output file size = 10138 bytes (2048 bytes = 16.81% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10087 bytes Input file size = 10177 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9188 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8976 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8976 Output IDAT size = 8976 bytes (1111 bytes decrease) Output file size = 9054 bytes (1123 bytes = 11.03% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26215 bytes Input file size = 26329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 Output IDAT size = 21199 bytes (5016 bytes decrease) Output file size = 21277 bytes (5052 bytes = 19.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10300 bytes Input file size = 10390 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9226 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9190 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9190 Output IDAT size = 9190 bytes (1110 bytes decrease) Output file size = 9268 bytes (1122 bytes = 10.80% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13026 bytes Input file size = 13116 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11149 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11149 Output IDAT size = 11149 bytes (1877 bytes decrease) Output file size = 11227 bytes (1889 bytes = 14.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13836 bytes Input file size = 13926 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11733 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11733 Output IDAT size = 11733 bytes (2103 bytes decrease) Output file size = 11811 bytes (2115 bytes = 15.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15247 bytes Input file size = 15337 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11871 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11871 Output IDAT size = 11871 bytes (3376 bytes decrease) Output file size = 11949 bytes (3388 bytes = 22.09% decrease) Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘introduction.Rmd’ --- re-building ‘regression.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15368 bytes Input file size = 15458 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 Output IDAT size = 12425 bytes (2943 bytes decrease) Output file size = 12503 bytes (2955 bytes = 19.12% decrease) Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd) Error: processing vignette 'regression.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘regression.Rmd’ SUMMARY: processing the following files failed: ‘introduction.Rmd’ ‘regression.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.3.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: bar_error.Rd: gf_summary bland_altman.Rd: gf_point box_plot.Rd: gf_boxplot gf_star.Rd: gf_text hist_norm.Rd: gf_dhistogram mhor.Rd: mh qq_plot.Rd: gf_qq, gf_line strip_error.Rd: gf_point, gf_jitter Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.3.2
Check: examples
Result: ERROR Running examples in ‘pubh-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: cosm_reg > ### Title: Cosmetics for tables of regression coefficients. Converts tables > ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics. > ### Aliases: cosm_reg > > ### ** Examples > > require(sjlabelled, quietly = TRUE) Attaching package: ‘sjlabelled’ The following object is masked from ‘package:huxtable’: set_label The following object is masked from ‘package:ggplot2’: as_label > > data(diet, package = "Epi") > diet <- diet %>% + var_labels( + chd = "Coronary Heart Disease", + fibre = "Fibre intake (g/day)" + ) > > model_binom <- glm(chd ~ fibre, data = diet, family = binomial) > > model_binom %>% + tbl_regression(exponentiate = TRUE) %>% + cosm_reg(bold = TRUE) %>% + theme_pubh(1) %>% + add_footnote(get_r2(model_binom), font_size = 9) Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) : The package "broom.helpers" (>= 1.15.0) is required. Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed Bernard 4.203 0.250 7.520 Vanderpump 4.304 0.052 6.547 Rothman 4.167 0.083 7.280 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23111 bytes Input file size = 23213 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 Output IDAT size = 18532 bytes (4579 bytes decrease) Output file size = 18610 bytes (4603 bytes = 19.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11482 bytes Input file size = 11572 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9683 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9683 Output IDAT size = 9683 bytes (1799 bytes decrease) Output file size = 9761 bytes (1811 bytes = 15.65% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11978 bytes Input file size = 12068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10016 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10016 Output IDAT size = 10016 bytes (1962 bytes decrease) Output file size = 10094 bytes (1974 bytes = 16.36% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10101 bytes Input file size = 10191 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9003 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9003 Output IDAT size = 9003 bytes (1098 bytes decrease) Output file size = 9081 bytes (1110 bytes = 10.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26215 bytes Input file size = 26329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 Output IDAT size = 21199 bytes (5016 bytes decrease) Output file size = 21277 bytes (5052 bytes = 19.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10347 bytes Input file size = 10437 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9238 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9231 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9231 Output IDAT size = 9231 bytes (1116 bytes decrease) Output file size = 9309 bytes (1128 bytes = 10.81% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13109 bytes Input file size = 13199 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11192 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11192 Output IDAT size = 11192 bytes (1917 bytes decrease) Output file size = 11270 bytes (1929 bytes = 14.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13961 bytes Input file size = 14051 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11929 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11929 Output IDAT size = 11929 bytes (2032 bytes decrease) Output file size = 12007 bytes (2044 bytes = 14.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15190 bytes Input file size = 15280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11889 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11889 Output IDAT size = 11889 bytes (3301 bytes decrease) Output file size = 11967 bytes (3313 bytes = 21.68% decrease) Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘introduction.Rmd’ --- re-building ‘regression.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15368 bytes Input file size = 15458 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 Output IDAT size = 12425 bytes (2943 bytes decrease) Output file size = 12503 bytes (2955 bytes = 19.12% decrease) Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd) Error: processing vignette 'regression.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘regression.Rmd’ SUMMARY: processing the following files failed: ‘introduction.Rmd’ ‘regression.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.2
Check: examples
Result: ERROR Running examples in ‘pubh-Ex.R’ failed The error most likely occurred in: > ### Name: cosm_reg > ### Title: Cosmetics for tables of regression coefficients. Converts tables > ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics. > ### Aliases: cosm_reg > > ### ** Examples > > require(sjlabelled, quietly = TRUE) Attaching package: ‘sjlabelled’ The following object is masked from ‘package:huxtable’: set_label The following object is masked from ‘package:ggplot2’: as_label > > data(diet, package = "Epi") > diet <- diet %>% + var_labels( + chd = "Coronary Heart Disease", + fibre = "Fibre intake (g/day)" + ) > > model_binom <- glm(chd ~ fibre, data = diet, family = binomial) > > model_binom %>% + tbl_regression(exponentiate = TRUE) %>% + cosm_reg(bold = TRUE) %>% + theme_pubh(1) %>% + add_footnote(get_r2(model_binom), font_size = 9) Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) : The package "broom.helpers" (>= 1.15.0) is required. Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23111 bytes Input file size = 23213 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 Output IDAT size = 18532 bytes (4579 bytes decrease) Output file size = 18610 bytes (4603 bytes = 19.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11561 bytes Input file size = 11651 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9673 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9673 Output IDAT size = 9673 bytes (1888 bytes decrease) Output file size = 9751 bytes (1900 bytes = 16.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12094 bytes Input file size = 12184 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10072 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10072 Output IDAT size = 10072 bytes (2022 bytes decrease) Output file size = 10150 bytes (2034 bytes = 16.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10008 bytes Input file size = 10098 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9084 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8923 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8923 Output IDAT size = 8923 bytes (1085 bytes decrease) Output file size = 9001 bytes (1097 bytes = 10.86% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26215 bytes Input file size = 26329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 Output IDAT size = 21199 bytes (5016 bytes decrease) Output file size = 21277 bytes (5052 bytes = 19.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10323 bytes Input file size = 10413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9214 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9214 Output IDAT size = 9214 bytes (1109 bytes decrease) Output file size = 9292 bytes (1121 bytes = 10.77% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13075 bytes Input file size = 13165 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11135 Output IDAT size = 11135 bytes (1940 bytes decrease) Output file size = 11213 bytes (1952 bytes = 14.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13876 bytes Input file size = 13966 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11868 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11868 Output IDAT size = 11868 bytes (2008 bytes decrease) Output file size = 11946 bytes (2020 bytes = 14.46% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15182 bytes Input file size = 15272 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11965 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11965 Output IDAT size = 11965 bytes (3217 bytes decrease) Output file size = 12043 bytes (3229 bytes = 21.14% decrease) Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘introduction.Rmd’ --- re-building ‘regression.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15368 bytes Input file size = 15458 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 Output IDAT size = 12425 bytes (2943 bytes decrease) Output file size = 12503 bytes (2955 bytes = 19.12% decrease) Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd) Error: processing vignette 'regression.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘regression.Rmd’ SUMMARY: processing the following files failed: ‘introduction.Rmd’ ‘regression.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'introduction.Rmd' using rmarkdown Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building 'introduction.Rmd' --- re-building 'regression.Rmd' using rmarkdown Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd) Error: processing vignette 'regression.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building 'regression.Rmd' SUMMARY: processing the following files failed: 'introduction.Rmd' 'regression.Rmd' Error: Vignette re-building failed. Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.3.2
Check: examples
Result: ERROR Running examples in ‘pubh-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: cosm_reg > ### Title: Cosmetics for tables of regression coefficients. Converts tables > ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics. > ### Aliases: cosm_reg > > ### ** Examples > > require(sjlabelled, quietly = TRUE) Attaching package: ‘sjlabelled’ The following object is masked from ‘package:huxtable’: set_label The following object is masked from ‘package:ggplot2’: as_label > > data(diet, package = "Epi") > diet <- diet %>% + var_labels( + chd = "Coronary Heart Disease", + fibre = "Fibre intake (g/day)" + ) > > model_binom <- glm(chd ~ fibre, data = diet, family = binomial) > > model_binom %>% + tbl_regression(exponentiate = TRUE) %>% + cosm_reg(bold = TRUE) %>% + theme_pubh(1) %>% + add_footnote(get_r2(model_binom), font_size = 9) Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) : The package "broom.helpers" (>= 1.15.0) is required. Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed Execution halted Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23111 bytes Input file size = 23213 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 Output IDAT size = 18532 bytes (4579 bytes decrease) Output file size = 18610 bytes (4603 bytes = 19.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11474 bytes Input file size = 11564 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652 Output IDAT size = 9652 bytes (1822 bytes decrease) Output file size = 9730 bytes (1834 bytes = 15.86% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11960 bytes Input file size = 12050 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10049 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10049 Output IDAT size = 10049 bytes (1911 bytes decrease) Output file size = 10127 bytes (1923 bytes = 15.96% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10002 bytes Input file size = 10092 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9182 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8903 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8903 Output IDAT size = 8903 bytes (1099 bytes decrease) Output file size = 8981 bytes (1111 bytes = 11.01% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26215 bytes Input file size = 26329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 Output IDAT size = 21199 bytes (5016 bytes decrease) Output file size = 21277 bytes (5052 bytes = 19.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10361 bytes Input file size = 10451 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9248 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9248 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9248 Output IDAT size = 9248 bytes (1113 bytes decrease) Output file size = 9326 bytes (1125 bytes = 10.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13106 bytes Input file size = 13196 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11171 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11171 Output IDAT size = 11171 bytes (1935 bytes decrease) Output file size = 11249 bytes (1947 bytes = 14.75% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13901 bytes Input file size = 13991 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11937 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11937 Output IDAT size = 11937 bytes (1964 bytes decrease) Output file size = 12015 bytes (1976 bytes = 14.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15269 bytes Input file size = 15359 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11892 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11892 Output IDAT size = 11892 bytes (3377 bytes decrease) Output file size = 11970 bytes (3389 bytes = 22.07% decrease) Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘introduction.Rmd’ --- re-building ‘regression.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15368 bytes Input file size = 15458 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 Output IDAT size = 12425 bytes (2943 bytes decrease) Output file size = 12503 bytes (2955 bytes = 19.12% decrease) Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd) Error: processing vignette 'regression.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘regression.Rmd’ SUMMARY: processing the following files failed: ‘introduction.Rmd’ ‘regression.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23111 bytes Input file size = 23213 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532 Output IDAT size = 18532 bytes (4579 bytes decrease) Output file size = 18610 bytes (4603 bytes = 19.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11598 bytes Input file size = 11688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9713 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9713 Output IDAT size = 9713 bytes (1885 bytes decrease) Output file size = 9791 bytes (1897 bytes = 16.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11992 bytes Input file size = 12082 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10001 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10001 Output IDAT size = 10001 bytes (1991 bytes decrease) Output file size = 10079 bytes (2003 bytes = 16.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10113 bytes Input file size = 10203 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9117 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9002 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9002 Output IDAT size = 9002 bytes (1111 bytes decrease) Output file size = 9080 bytes (1123 bytes = 11.01% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26215 bytes Input file size = 26329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199 Output IDAT size = 21199 bytes (5016 bytes decrease) Output file size = 21277 bytes (5052 bytes = 19.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10326 bytes Input file size = 10416 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9218 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9218 Output IDAT size = 9218 bytes (1108 bytes decrease) Output file size = 9296 bytes (1120 bytes = 10.75% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13006 bytes Input file size = 13096 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11124 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11124 Output IDAT size = 11124 bytes (1882 bytes decrease) Output file size = 11202 bytes (1894 bytes = 14.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13913 bytes Input file size = 14003 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11843 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11843 Output IDAT size = 11843 bytes (2070 bytes decrease) Output file size = 11921 bytes (2082 bytes = 14.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15289 bytes Input file size = 15379 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11880 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11880 Output IDAT size = 11880 bytes (3409 bytes decrease) Output file size = 11958 bytes (3421 bytes = 22.24% decrease) Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘introduction.Rmd’ --- re-building ‘regression.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15368 bytes Input file size = 15458 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425 Output IDAT size = 12425 bytes (2943 bytes decrease) Output file size = 12503 bytes (2955 bytes = 19.12% decrease) Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd) Error: processing vignette 'regression.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘regression.Rmd’ SUMMARY: processing the following files failed: ‘introduction.Rmd’ ‘regression.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64