ggplot2 to be compatible with version
4.0.0 (thanks to @teunbrand for the PR).plotCor()gains the argument text_size to
tweak the size of the text in the plotblockCV
version 3.x (#24)raster package has been deprecated
(#23)SDMtune migrated to package terra to
handle spatial data. Objects created with the package
raster will not be supported in future releasesSDMtune has a new progress bar and
messages/warnings/errors have a new lookmodelReport(), prepareSWD,
reduceVariable(), thinData(), and
varSel() gain the argument verbose to disable
informative messagesgridSearch(), optimizeModel(),
randomSearch(), reduceVar(), and
varSel() gain the argument interactive to
disable the interactive real-time chartdoJk(), gridSearch(),
optimizeModel(), predict(),
randomSearch(), thinData(),
train(), varImp(), and varSel()
gain the argument progress to disable the progress barthinData() prints a message with the
number of removed locationsfactors in modelReport() is
deprecated. See terra documentation to see how to use
factors during predictionsBug fixes:
plotCor() plots a correct heatmap when there are more
than 9 variablesdoJk() runs also without testing datasetResolve CRAN notes
Bug fixes:
ENMeval >=
2.0Bug fixes: Add the argument factors to the function
modelReport() to allow predictions for raster objects
including categorical variables
Include Java >=8 in system requirements
get_tunable_args().Main changes:
checkMaxentInstallation() to check if
Maxent is correctly configured.get_tunable_args() has been replaced by
getTunableArgs() to be consistent with the camel case
function naming. At the moment is still possible to use both functions
but get_tunable_args() will be deprecated in the next
release.Bug fix: plotPA function now works also with new version
of ggplot2.
Main changes:
thinData accept now a matrix or a
dataframe with several columns, useful if the users has information
related to the coordinates that doesn’t want to lose with the thinning
procedure.plotResponse plots the response for the
full range of presences and backgrounds/absences when only_presence is
TRUE, only_presence is unused only to compute the provided function to
the range of presence locations when marginal = TRUEBug fix:
Bug fixes:
Main changes:
addSamplesToBg to add presence locations
to background location.extra_args in Maxent models cannot be changed
anymore.Bug fix: Fix CRAN error for r-oldrel
Main changes:
SDMmodelCV objectstrain functionSDMmodelCV objectmergeSWD functionBug fixes:
plotPA function now works also with large raster
objectsThis release is the first step to enable more methods to train
models. The main change is that the SDW object now bundles
together the presence and the absence/background locations and is not
necessary anymore to pass the presence and absence locations as separate
arguments to the train function.
Old objects of class SWD, SDMmodel,
SDMmodelCV and SDMtune created with version
<= 0.1.1 must be converted into the new format using the dedicated
help functions.
Main changes:
SWD object bundles together the presence and
absence/background locationstrain
accepts now folds partition generated with other packages (i.e. ENMeval
and blockCV)plot function for
SDMtune objectsvirtualSp with presence,
absence and background locationsDeprecated function: getSubsample
VarImp function for SDMmodelCV
objectsmaxentVarImp function available for
SDMmodelCV objects