TDCor: Gene Network Inference from Time-Series Transcriptomic Data
The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.
| Version: |
0.1-2 |
| Depends: |
R (≥ 3.1.2), deSolve |
| Imports: |
parallel |
| Published: |
2015-10-26 |
| DOI: |
10.32614/CRAN.package.TDCor |
| Author: |
Julien Lavenus |
| Maintainer: |
Mikael Lucas <mikael.lucas at ird.fr> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
TDCor results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=TDCor
to link to this page.