Analyse common types of plant phenotyping data, provide a simplified interface to longitudinal growth modeling and select Bayesian statistics, and streamline use of 'PlantCV' output. Several Bayesian methods and reporting guidelines for Bayesian methods are described in Kruschke (2018) <doi:10.1177/2515245918771304>, Kruschke (2013) <doi:10.1037/a0029146>, and Kruschke (2021) <doi:10.1038/s41562-021-01177-7>.
Version: | 1.0.0 |
Depends: | R (≥ 3.5.0) |
Imports: | FactoMineR, rlang, stats, utils, methods, data.table, ggplot2, ggridges, igraph, jsonlite, lme4, patchwork, extraDistr, parallel, bayestestR, viridis, mgcv, quantreg, nlme, splines, lmeSplines, scales, survival, car |
Suggests: | knitr, rmarkdown, brms, flexsurv, curl, cmdstanr, rstan, caret, testthat (≥ 3.0.0) |
Published: | 2024-09-05 |
DOI: | 10.32614/CRAN.package.pcvr |
Author: | Josh Sumner |
Maintainer: | Josh Sumner <jsumner at danforthcenter.org> |
BugReports: | https://github.com/danforthcenter/pcvr/issues |
License: | GPL-2 |
URL: | https://github.com/danforthcenter/pcvr, https://plantcv.org/, https://danforthcenter.github.io/pcvr/ |
NeedsCompilation: | no |
Additional_repositories: | https://mc-stan.org/r-packages/ |
Materials: | README NEWS |
CRAN checks: | pcvr results |
Reference manual: | pcvr.pdf |
Vignettes: |
Bellwether (source, R code) Directional Statistics in PCVR (source, R code) Longitudinal Growth Modeling Options (source, R code) Root Traits (source, R code) |
Package source: | pcvr_1.0.0.tar.gz |
Windows binaries: | r-devel: pcvr_1.0.0.zip, r-release: pcvr_1.0.0.zip, r-oldrel: pcvr_1.0.0.zip |
macOS binaries: | r-release (arm64): pcvr_1.0.0.tgz, r-oldrel (arm64): pcvr_1.0.0.tgz, r-release (x86_64): pcvr_1.0.0.tgz, r-oldrel (x86_64): pcvr_1.0.0.tgz |
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