shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis
Provides a comprehensive 'Shiny' application for analyzing
Whole Genome Duplication ('WGD') events.
This package provides a user-friendly 'Shiny' web application for
non-experienced researchers to prepare input data and execute command lines
for several well-known 'WGD' analysis tools, including 'wgd', 'ksrates',
'i-ADHoRe', 'OrthoFinder', and 'Whale'. This package also provides the source code
for experienced researchers to adjust and install the package to their own server.
Key Features
1) Input Data Preparation
This package allows users to conveniently upload and format their data,
making it compatible with various 'WGD' analysis tools.
2) Command Line Generation
This package automatically generates the necessary command lines for
selected 'WGD' analysis tools, reducing manual errors and saving time.
3) Visualization
This package offers interactive visualizations to explore and interpret 'WGD' results,
facilitating in-depth 'WGD' analysis.
4) Comparative Genomics
Users can study and compare 'WGD' events across different species,
aiding in evolutionary and comparative genomics studies.
5) User-Friendly Interface
This 'Shiny' web application provides an intuitive and accessible interface,
making 'WGD' analysis accessible to researchers and 'bioinformaticians' of all levels.
| Version: |
1.0.0 |
| Imports: |
shiny, shinyalert, stringr, vroom, fs, tidyr, data.table, dplyr, ape, ks, mclust, htmltools, seqinr, httr, jsonlite |
| Suggests: |
tidyverse, knitr, rmarkdown, DT, argparse, bslib, bsplus, english, fontawesome, igraph, shinyBS, shinyFiles, shinyWidgets, shinyjs, stringi, tools, testthat (≥ 3.0.0) |
| Published: |
2024-11-13 |
| DOI: |
10.32614/CRAN.package.shinyWGD |
| Author: |
Jia Li [aut, cre],
Zhen Li [ctb],
Arthur Zwaenepoel [ctb] |
| Maintainer: |
Jia Li <li081766 at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| SystemRequirements: |
pandoc (>= 1.12.3), pandoc-citeproc |
| Materials: |
README |
| CRAN checks: |
shinyWGD results |
Documentation:
Downloads:
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