R: Amino Acid Annotation (A3) Format

# Amino Acid Annotation (A3) Format

## Documentation for package ‘rtemis.a3’ version 0.5.3

- DESCRIPTION file.

## Help Pages

rtemis.a3-package | rtemis.a3: Amino Acid Annotation format
aa_sub | Perform amino acid substitutions
annotation_position | Create position-based annotations for A3
annotation_range | Create range-based annotations for A3
annotation_variant | Create variant annotations for A3
clinvar_variants | Fetch ClinVar variants for a gene and parse them into A3Variant objects
concat | Concatenate character vector to single string for sequence input
create_A3 | Create an A3 object from sequence, annotations, and metadata
gene2sequence | Get the coding sequence of a gene
get_alphafold | Get AlphaFold info for a given UniProt ID
pdb_annotations | Fetch PDB structural annotations for a UniProt accession
read_A3json | Read 'A3' object from JSON file
rtemis.a3 | rtemis.a3: Amino Acid Annotation format
uniprot_sequence | Fetch a protein sequence from UniProt
uniprot_to_A3 | Fetch a UniProt entry and parse it into an A3 object
write_A3json | Write 'A3' object to JSON file