R: Compositional Data Analysis for Microbiome Studies

# Compositional Data Analysis for Microbiome Studies

## Documentation for package ‘coda4microbiome’ version 0.2.4

- DESCRIPTION file

## Help Pages

coda4microbiome | coda4microbiome: Compositional Data Analysis for Microbiome Studies
coda_coxnet | coda_coxnet
coda_glmnet | coda_glmnet
coda_glmnet0 | coda_glmnet0
coda_glmnet_longitudinal | coda_glmnet_longitudinal
coda_glmnet_longitudinal0 | coda_glmnet_longitudinal0
coda_glmnet_longitudinal_null | coda_glmnet_longitudinal_null
coda_glmnet_null | coda_glmnet_null
Crohn | Crohn
ecam_filtered | ecam_filtered
Event | data_survival
Event_time | data_survival
explore_logratios | explore_logratios
explore_lr_longitudinal | explore_lr_longitudinal
explore_zeros | explore_zeros
filter_longitudinal | filter_longitudinal
HIV | HIV
impute_zeros | impute_zeros
integralFun | integralFun
logratios_matrix | logratios_matrix
metadata | ecam_filtered
MSM_HIV | HIV
plotMedianCurve | plotMedianCurve
plot_prediction | plot_prediction
plot_riskscore | plot_riskscore
plot_signature | plot_signature
plot_signature_curves | plot_signature_curves
plot_survcurves | plot_survcurves
sCD14 | sCD14
shannon | shannon
shannon_effnum | shannon_effnum
shannon_sim | shannon_sim
taxanames | ecam_filtered
x | data_survival
x_Crohn | Crohn
x_ecam | ecam_filtered
x_HIV | HIV
x_sCD14 | sCD14
y_Crohn | Crohn
y_HIV | HIV
y_sCD14 | sCD14